Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1125 ATGTCTTCTAACGCCATCGTCCAATACAGGACTTCTTCATCTCATGCAATTCAAACATATGATGTATTTGTGAGCTTCCGCGGTGAAGACACGCGCAACAACTTCACTGGTTTTCTGTTTGAAGCTCTCCGTAGAAAAGGCATCGATGCCTTCAAAGATGATGAAGATCTCAAAAAAGGTGAATCCATAGCACCCGAGCTCCTCCATGCCATTCAAGGCTCTCGACTTTTTATTGTTGTCTTCTCAAAGAACTATGCTTCCTCCACCTGGTGCTTGCGTGAACTGGCAGAGATACGTAACTGCGTTGAAACTTCACCAAGACGTGTTATACCTGTCTTTTATGACGTTGATCCTTCGGTTGTGCGCAAGCAAAGTGAATGTTATGAGAAAGCATTTGCTGAATACGAAAAGAGATTCAGAGACGACCAAGCGAAGATGGAGGAAGCTCAGAGATGGAGAGAAACTCTCACAAAAATGGCCAATCTCTCTGGTTGGGATATCCAAAATAAGCCACAATATGTACAAATTGAAGAAATTGTTCAAAACGTAACAAATATTTTGGGTCCCAAAATTTGTAGTCTTCAAAAGGATGAACTAGTTGGGATAGAGTATGGACTTGAAAACTTAGCAAATCTTGTATGTTACGAATCAGTTAATAATGTTCAAGTTGTTGGAATCAGTGGGATGGGTGGCATAGGAAAGACTACTCTTGTTCGAGCTTTATACGAAAGAATCTATCATCAATATGATTTTCATTGTTTTATTGATGATGTAAGTAAAATATATCGAGATTCAAGTTCACTAGGTGTACAAAAGCAGTTGATTTCTCAGTCTTTAAATGAAAAATATCTAGAGATTTCAAACTCTTTTGAGGGAACATGTTTGATGTGGTCTAGGCTGCACAATGTTAGGGCACTTGTAGTTCTGGACAATGTTGATGAAGTTGAACAACTAAAGATGTTTACAGGGAACAGAGACACTTTGTTGCATGAATGCTTAGGTGGAGGGAGCATAATCATCATAGTTTCTAGAGATGAACATATATTGAGGACACATGGAGTAGATGACATTTATCGAGTCCCTCCATTGAATAACGAAAATGCTATGCAACTGTTATGTAGAAAGGCTTTCAAACTTAATTATATTTTGAGTGATTATGAAAGGCTGGCATTTGATGTGGTATCTCATGCTCAGGGCCATCCCTTGGCAATTGAAGTAATTGGGTCATCTTTGTTTGGTCGAAATGTGTCACAGTGGAAAAGTGCAGTGGCCAGGCTAAAAGGAATAAAAAATAAAAATATTATGGATGTTTTGCGTATAAGTTTTGATCAACTGGATGAAGAAGACAAAGAAATATTTTTGGATATTGCATGTGCCCTTTGCAAGCATGACGAGAAATATGTGAAGGAAGTTCTAAACTTTCGTGGATTTCATCCTGAATACAGTCTACAAGTTCTGCATGACAAATCACTAATAATAAAAGAGGATGGGCATATTTATATGCATAGGTTATTGAATGACTTGGGTAGGTGTATTGTCAAAGAAGAATCACATAAGGAACCCCTAAAGAGGAGTAGGTTGTGCGATTACCAAGATTTCCACAAAGCAATGTCAAACAATCAGACAACTGAAATTCTTGAAGTCGTAGCTGTTGATTTACAATGGAGTTCTAAACCTATGAGGGTAAATGGTCTATCGAAAATTAGACACCTTAAGTTGCTTAGACTTGAGAACACGCTTCTATGTTCGGACGTGAACTTTTCAGGAAGTCTTAGTCATCTTTCCAATGAACTAGGATATCTTACTTGGTATAAATATCCTTTTGAGTGTTTGCCTCAAAGTTTTCAGCCACACAAACTAGTTGAGTTAAAATTGAGATACAGCAGTATTCGACGATTATGGAGTGACACAAAGGTGCTACCTAATTTGAAGCGTTTGTATCTCTCTAACTCCAAAAAATTAGTTGAGATGCCAGATGTTGCAGAGGCCCTAAATCTTGAAGAGATAGATCTTGAAGGATGCATACAGCTCCGAAAACTCAGTCCATCGATTGGTTTTCTAAGGAAGCTTACTATTTTGAATTTGGAAAACTGTAAAAACTTAGTAAGCTTACCCAATAGCATATTGGGCTTGAAATCTCTTGAATATCTGAATGTCTCTGGTTGTTCAAACCTGTTTAATAATGAGTTATTAGATCAAGCAAGGAACACAGAGCATTTGGAGAAGCTTTGTTTAGTTAAAGGTCTTATTCATTCCCACTCAACATCCCCTTCAATCAAAAAAATGCTTTGGTGGACTTTAGATTTGTTGTATTCAAGAGCACAAAGAGAGTTACCCTCCTCTCCTACTCTCCCTTGTTTGCGTGAACTCGATCTAAGATTTTGTAACTTAGTTACAATCCCTGATGCCATTGGAAAGTTACGTTGCTTAGAAAAGTTAAATTTGAAGGGAAACAATTTTGTTATATTGCCAAACCTCAGGAACCTTTTCAGACTGTATTATTTAAACTTACAACATTGCAAGCATTTGAAATACTTGCCTGACCTCCCTTCACGAATTCACTTGCCCTTAAAAGTTTACGAGATTTCGAGAGAATATTTTGCATCTGTATATATTATTACACTAGAGGAGGATGAAGAAAAGGCAGGATTACTTATTTTCAACTGCCCAGAAATAGTTAAGAGGAAACGGTGCACAAGCATGAGTGTTTTATGGATGTTACAAATTGTTCAGGTGTGCATCTTTCTTCTTTACCCCTTTCCTTCTTTTAATCTCTTTTGGTGTTGGAAAACAATTACTAACATATAA 2808 0.3732 MSSNAIVQYRTSSSHAIQTYDVFVSFRGEDTRNNFTGFLFEALRRKGIDAFKDDEDLKKGESIAPELLHAIQGSRLFIVVFSKNYASSTWCLRELAEIRNCVETSPRRVIPVFYDVDPSVVRKQSECYEKAFAEYEKRFRDDQAKMEEAQRWRETLTKMANLSGWDIQNKPQYVQIEEIVQNVTNILGPKICSLQKDELVGIEYGLENLANLVCYESVNNVQVVGISGMGGIGKTTLVRALYERIYHQYDFHCFIDDVSKIYRDSSSLGVQKQLISQSLNEKYLEISNSFEGTCLMWSRLHNVRALVVLDNVDEVEQLKMFTGNRDTLLHECLGGGSIIIIVSRDEHILRTHGVDDIYRVPPLNNENAMQLLCRKAFKLNYILSDYERLAFDVVSHAQGHPLAIEVIGSSLFGRNVSQWKSAVARLKGIKNKNIMDVLRISFDQLDEEDKEIFLDIACALCKHDEKYVKEVLNFRGFHPEYSLQVLHDKSLIIKEDGHIYMHRLLNDLGRCIVKEESHKEPLKRSRLCDYQDFHKAMSNNQTTEILEVVAVDLQWSSKPMRVNGLSKIRHLKLLRLENTLLCSDVNFSGSLSHLSNELGYLTWYKYPFECLPQSFQPHKLVELKLRYSSIRRLWSDTKVLPNLKRLYLSNSKKLVEMPDVAEALNLEEIDLEGCIQLRKLSPSIGFLRKLTILNLENCKNLVSLPNSILGLKSLEYLNVSGCSNLFNNELLDQARNTEHLEKLCLVKGLIHSHSTSPSIKKMLWWTLDLLYSRAQRELPSSPTLPCLRELDLRFCNLVTIPDAIGKLRCLEKLNLKGNNFVILPNLRNLFRLYYLNLQHCKHLKYLPDLPSRIHLPLKVYEISREYFASVYIITLEEDEEKAGLLIFNCPEIVKRKRCTSMSVLWMLQIVQVCIFLLYPFPSFNLFWCWKTITNI* 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1125 935 Gene3D Ribonuclease Inhibitor 765 870 IPR032675 -
Vra2g1125 935 SMART till_3 19 162 IPR000157 GO:0007165
Vra2g1125 935 Gene3D - 362 446 IPR042197 -
Vra2g1125 935 Pfam TIR domain 20 201 IPR000157 GO:0007165
Vra2g1125 935 SMART LRR_typ_2 807 832 IPR003591 -
Vra2g1125 935 SMART LRR_typ_2 784 806 IPR003591 -
Vra2g1125 935 SMART LRR_typ_2 687 711 IPR003591 -
Vra2g1125 935 SMART LRR_typ_2 640 664 IPR003591 -
Vra2g1125 935 PRINTS Disease resistance protein signature 223 238 - -
Vra2g1125 935 PRINTS Disease resistance protein signature 299 313 - -
Vra2g1125 935 PRINTS Disease resistance protein signature 397 411 - -
Vra2g1125 935 PRINTS Disease resistance protein signature 685 701 - -
Vra2g1125 935 ProSiteProfiles Leucine-rich repeat profile. 809 830 IPR001611 GO:0005515
Vra2g1125 935 SUPERFAMILY L domain-like 501 852 - -
Vra2g1125 935 Gene3D Ribonuclease Inhibitor 514 747 IPR032675 -
Vra2g1125 935 Pfam NB-ARC domain 219 430 IPR002182 GO:0043531
Vra2g1125 935 Gene3D - 191 355 IPR027417 -
Vra2g1125 935 Gene3D - 17 190 IPR035897 -
Vra2g1125 935 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 860 IPR044974 GO:0006952
Vra2g1125 935 ProSiteProfiles TIR domain profile. 18 187 IPR000157 GO:0007165
Vra2g1125 935 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 456 IPR027417 -
Vra2g1125 935 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 17 860 - -
Vra2g1125 935 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 165 IPR035897 -
Vra2g1125 935 Pfam Leucine Rich Repeat 619 638 IPR011713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1125 Vra-Chr2 14281101 14285999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1125 10 825 WRKY Transcription Factor Family AT4G12020 30.310 4.97e-79 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1125 - - vra:106780741 1876.29