Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1116 ATGGCTTGCAACAAAAGTCAACGGAGCTCTTCATCACACACCAAGAATTTTGATGTGTTTGTTAGCTTTAGAGGTGCAGATACTCGTAACGGTTTCACAAATCACCTTTTTGCAGCTCTTCAAAGAAAAGGAGTTGTTGCTTTCAGAGATGACCAAACAATCCAGAAAGGAGACTTTTTGGAGTCTGAACTCTTGCTCGCAATTGAAGGATCACGCGTTTTCATTGTTGTCTTCTCAAAGGACTATGCATCATCCACATGGTGCATGAAAGAGCTTACAAAGATCGTCGATTGGGTTGAAGTAACAGGTCGAAGTTTGCTCCCTATTTTCTATGATGTCACTCCTTCTGAGGTCCGAAAACAGAGTGGAGAGTTTGCTAAAGCTTTTGCTGAACACGAAGAAAGGTTCAAAGATGACTTGGAAATGGTAAAAGGATGGAGGGCAGCTCTCAAAACAAGCTGCGATCGTTGTGGGTGGGATGTGCAAAATAAGCAGCAATATGAGGAAATTGAAAACGTTGTTGAAGAGGTAATCAACATATTGGGTCGTAATCAAATTTGGAATTTTGGCGATGATTTAGTTGACATGCATTCTCGTGTTAAAAAATTGGAAGAACTTCTAGATCTGAGTGCTAATGATATTGTTCACCTTGTGGGAATTTGTGGAATGGGTGGAATAGGAAAGAGCACACTTGCAACTGCATTGTTCAATAAAATCTCTCCTCAATTTGATGCTTGTTGTTACCTTGATGATTTAAGCAAAATTTATTGTAATTTTGGAGCAGCAAGTGCACAAAAACAACTTCTTTGTCAAGCTCTAAATCAAGGAAATATCGAGATACACAATGCTTCCCATGGAACTATGTTGTTAAGAACTAGATTATGTCACTTAAAAGCGCTTGTTGTTGTTGATAATGTTGATCAAGTTGACCAATTAAAGAAATTGGGTTTGCAATCTGAATATCTGGGTGCAGGGAGCAGAATCATCATAATTTCTAGAAATCGTCGTATCTTACAAAATTACGGAGTAAATAAAGTTTACGAAGTTCAAGTCTTGGACNAAACNNAATCTCTTCAATTACTTNGCAAGAAAGCTTTCAGATCGAATGATATTGGGAAAGAACATGAANGGTTGACATTAGATATACTGAAGTATGTGAATGGTCTTCCATTAGCTATTGAAGTATTGGGCTCATTTTTACTTGATCGAGATGTTTGTGAATGGAGAAGTGCATTGACTAGAATGGAAGAAAATCCAAGCAAAGATATCATGGATGTGTTGCGAATAAGTTATGATGGATTGGAGAATATAGAGAAAGAAATATTTCTAGATATTGCTTGTTTCTTCTCCAAAAATATTTTCTACCCATTGGAGCCAACAGTGAAGAAACTTTTAGACTATCGACAATTTTATCCTGACATTGGTTTGAAGGTTCTGATTGAGAAGTCACTTATAAGATGTCAAGATCAGATTATTAAAATGCATGACTTGTTGAAAGAGTTGGGTAAGAGTATTGTCCGAGAAAAAGCACCCAAAGAGCCGAGGAAGTGGAGCAGGTTATGGAACTACAAGGATCTCCAAAAAGTCATGAAAATAAATAAGGAAGCCGAAAATGTTGAAGCTATATTTATTGAACAATATGAGTTACAAGGAAGAATAAGAGTGGATGCTTTATCAAAAATGGATCACCTTGAGTTGCTCATTCTGCAGAATGTGAACTGTTATGGAACTCTCAATTTCATTTCTAATGAACTGAGATATCTATTTTGGAATCACTTTCCTTGGTTGTCTTTGCCATCAACTTTCTTTCCAGATCAACTTGTAGAATTGATCCTACCTCATAGCAATATCAAGCAATTATGGGAAGGAAAAAAGTGTCTGCCTAATTTGAGAAATTTGGATCTGAGACACTCCAAAAATCTTATTGAGGTGCCAGACTTAAGTGAGGTTCCACGTCTTACGGATCTTAATCTCAAAGGATGTATACAACTAGTCCACATCCATCCATCAATTGGTATTCTAAGAGACCTTCGTTGTTTGAATTTGAAGAATTGTAAAAATCTTGTCCTTAATTTTGGGATCAGTTCACTTAATAGTAAGATGTTAATGGACCCAAGTGACACAAAACATTTGGAGAAAGTTGATAAAAATACAAATATCATCCAATTGCCAACATCCTCTGTATACAAACTTCTAATGTTGCCTTTCCATTTTTTCTACCCTCCAAAACCTCAAGATTCAATTGGTTCGTTATTGTCTTCTTTTTCTTTCTCTGTCCCGTGTTTGTTTAACCTTGACATAAGCTTCTGTAATCTACTTCAAATCCCAGATGAAATTGGGAACTTACGTTCTTTAGAAATATTAAATTTGGGGGGAAACAAATTTGTGACACTACCAAGCACCATCAAGCAACTTTCCTATCTTCATTATTTGAACTTGACACACTGCAAGGAGCTAAAATATTTGCCCGAGCTTCCAACAATACAAGAAAAAACAATTGGCAGATACAGTAATCAATTATCCACTTTTGACTGCCCCAAGTTGAGTGATTTGGAGCACTGTTATAGCATAGTTTTTTCTTGGATGACGAAAAATCTTGAGATGGAAATTGTTGTTCCTGGAAGTGAAATTCCAAAGTGGTTCAGTAAACAAAAGGCAAGTACATCAATAAGTATGGACCCATCTGCTGTTATAGATGACCCAAATTGGATAGGTGTTTCCATTTGTGTTCTATTTGTCACACACGAAGGTCCTATGAATTTGGGTGAAAGAGGTTATCCTACAGACACTCTTTTTTACGGTGTTAATAATGTCAACTTTGAGAGAAAATTGTATTCAGAATTTCTTATAATATTAAAGAAAGATCTGGTGACAGTTGGGTTAGATTATTTGTTGATAGTGTTTTACTCTCGACAAGAATTCATTCATCTTCTAAATGGACATTCAGATACCATGCATGATCTTCAAGCACTTAAATTTGAAACTCTGGTTGAGATTTATCCAGGTTTACATGAGAGTCATCCAGGTTTACATTTTATGGTGAAGAAGTGCGGGTATCGTTGGGTATTTAAGGAGGATGTTCAACAATTCAACTCAGACAAGTTTTTTAGCAGAAATTCTTCATCACGGAAGAGGAAGCTTCTAACAAGTGAGTAA 3156 0.3628 MACNKSQRSSSSHTKNFDVFVSFRGADTRNGFTNHLFAALQRKGVVAFRDDQTIQKGDFLESELLLAIEGSRVFIVVFSKDYASSTWCMKELTKIVDWVEVTGRSLLPIFYDVTPSEVRKQSGEFAKAFAEHEERFKDDLEMVKGWRAALKTSCDRCGWDVQNKQQYEEIENVVEEVINILGRNQIWNFGDDLVDMHSRVKKLEELLDLSANDIVHLVGICGMGGIGKSTLATALFNKISPQFDACCYLDDLSKIYCNFGAASAQKQLLCQALNQGNIEIHNASHGTMLLRTRLCHLKALVVVDNVDQVDQLKKLGLQSEYLGAGSRIIIISRNRRILQNYGVNKVYEVQVLDXTXSLQLLXKKAFRSNDIGKEHEXLTLDILKYVNGLPLAIEVLGSFLLDRDVCEWRSALTRMEENPSKDIMDVLRISYDGLENIEKEIFLDIACFFSKNIFYPLEPTVKKLLDYRQFYPDIGLKVLIEKSLIRCQDQIIKMHDLLKELGKSIVREKAPKEPRKWSRLWNYKDLQKVMKINKEAENVEAIFIEQYELQGRIRVDALSKMDHLELLILQNVNCYGTLNFISNELRYLFWNHFPWLSLPSTFFPDQLVELILPHSNIKQLWEGKKCLPNLRNLDLRHSKNLIEVPDLSEVPRLTDLNLKGCIQLVHIHPSIGILRDLRCLNLKNCKNLVLNFGISSLNSKMLMDPSDTKHLEKVDKNTNIIQLPTSSVYKLLMLPFHFFYPPKPQDSIGSLLSSFSFSVPCLFNLDISFCNLLQIPDEIGNLRSLEILNLGGNKFVTLPSTIKQLSYLHYLNLTHCKELKYLPELPTIQEKTIGRYSNQLSTFDCPKLSDLEHCYSIVFSWMTKNLEMEIVVPGSEIPKWFSKQKASTSISMDPSAVIDDPNWIGVSICVLFVTHEGPMNLGERGYPTDTLFYGVNNVNFERKLYSEFLIILKKDLVTVGLDYLLIVFYSRQEFIHLLNGHSDTMHDLQALKFETLVEIYPGLHESHPGLHFMVKKCGYRWVFKEDVQQFNSDKFFSRNSSSRKRKLLTSE* 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1116 1051 SUPERFAMILY L domain-like 493 845 - -
Vra2g1116 1051 Gene3D - 180 346 IPR027417 -
Vra2g1116 1051 Gene3D Ribonuclease Inhibitor 522 726 IPR032675 -
Vra2g1116 1051 Gene3D Ribonuclease Inhibitor 744 893 IPR032675 -
Vra2g1116 1051 Gene3D - 351 435 IPR042197 -
Vra2g1116 1051 PRINTS Disease resistance protein signature 217 232 - -
Vra2g1116 1051 PRINTS Disease resistance protein signature 293 307 - -
Vra2g1116 1051 PRINTS Disease resistance protein signature 386 400 - -
Vra2g1116 1051 PRINTS Disease resistance protein signature 625 641 - -
Vra2g1116 1051 Gene3D - 9 179 IPR035897 -
Vra2g1116 1051 Pfam NB-ARC domain 200 423 IPR002182 GO:0043531
Vra2g1116 1051 SMART till_3 16 156 IPR000157 GO:0007165
Vra2g1116 1051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 445 IPR027417 -
Vra2g1116 1051 ProSiteProfiles TIR domain profile. 15 177 IPR000157 GO:0007165
Vra2g1116 1051 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 159 IPR035897 -
Vra2g1116 1051 Pfam C-JID domain 872 1028 IPR045344 -
Vra2g1116 1051 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 888 IPR044974 GO:0006952
Vra2g1116 1051 Pfam TIR domain 16 174 IPR000157 GO:0007165
Vra2g1116 1051 Pfam Leucine Rich Repeat 606 625 IPR011713 -
Vra2g1116 1051 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 14 888 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1116 Vra-Chr2 14138792 14142469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1116 12 824 WRKY Transcription Factor Family AT4G12020 29.327 7.45e-78 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1116 - - vra:106780706 2036.92