Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1110 ATGGCTTCCAACAAAAGACAACGGAGCTCTTCATCACACACGAAGAATTTTGATGTGTTTGTTAGCTTTAGAGGTGCAGATACTCGTAACGGTTTCACAAATCACCTTTTTGCAGCTCTTGAAAGAAACGGAGTTGTTGCTTTCAGAGATGACCAAACAATCCAGAAAGGGAACTTTTTGGAGTCTGAACTCTTGCTCGCAATTGAAGGATCACGCGTTTTCATTGTTGTCTTCTCAAAGGACTATGCATCATCCACATGGTGCATGAAAGAGCTTACAAAGATCGTCGATTGGGTTGAAGTAACAGGTCGAAGTTTGCTCCCTATTTTCTATGATGTCACTCCTTCTGAGGTCCGCAAACAGAGTGGAGAGTTTGCTAAAGCTTTTGCTGAACACGAAGAAAGGTTCAAAGATGACTTGGAAATGGTAAAAGGATGGAGGGCAGCTCTGAAAACAAGCTGCGATCGTTGTGGGTGGGATGTGCAAAATAAGCAGCAATATGAACAAATCGAAAACGTTGTTGAAGAGGTAATCAACATATTGGGTCGTAATCAAATTTGGAATTTTGGCGATGATTTAGTTGACATGCATTCTCGTGTTAAAAAATTGGAAGAACTTCTAGATCTGAGTGCTAATGATATTGTTCACCTTGTGGGAATTTGTGGAATGGGTGGAATAGGAAAGACCACACTTGCAACTGCATTGTTCAATAAAATCTCTCCTCAATTTGATGCTTGTTGTTACCTTGATGATTTAAGCAAAATTTATTGTAATTTTGGAGCAGCAAGTGCACAAAAACAACTTCTTTGTCGAGCTCTAAATCGAGGAAATATCGAGATACACAATGCTTCCCATGGAACTATGTTGATAAGAACTAGATTATGTCACTTAAAAGCGCTTGTTGTTGTTGATAATGTTGATCAAGTTGAACAATTAAAGAAATTGGGTTTGCAATCTGAATATCTGGGTGCAGGGAGCAGAATCATCATAATTTCTAGAAATCGTCGTATCTTACAAAATTACGGAGTAAATAAAGTTTACGAAGTTCAAGTCTTGGACNAAACNNAATCTCTTCAATTACTTNGCAAGAAAGCTTTCAGATCGAATGATATTGGGAAAGAACATGAANGGTTGACATTAGATATACTGAAGTATGTGAATGGTCTTCCATTAGCTATTGAAGTATTGGGCTCATTTTTACTTGATCGAGATGTTTGTGAATGGAGAAGTGCATTGACTAGAATGGAAGAAAATCCAAGCAAAGATATCATGGATGTGTTGCGAATAAGTTATGATGGATTGGAGAATATAGAGAAAGAAATATTTCTAGATATTGCTTGTTTCTTCTCCAATAATAATTTGTACTCATGGGAGCCAACAGTGAAGAAACTTTTAGATTATCGACAATTTTATTCTGACATTGGTATGAAAGTTCTGATTGAGAAGTCACTTATAAGATGTCAAGATGAGACTATTATAATGCATGACTTGTTGAAAGAGTTGGGTAAGAGTATTGTCCGAGAAAAAGCACCCAAAGAGCCAAGGAAGTGGAGCAGGTTATGGAACTACAAGGATCTCCAAAAAGTCACGAAAATAAATAAGGAAGCCGAAAAGGTTGAAGCTATACTTATTGAACAACATGAAAAAGAATTTCTACAAGGAAGAATAAGAGTGGATGCTTTATCAAAAATGGATCACCTTGAGATGCTCATTCTGCAGAATGTGAACTGTTATGGAACTCTCAATTTCATTTCTAATGAACTGAGATATCTATTTTGGAATCACTTTCCTTGGTTGTCTTTGCCATCAACCTTCTTTCCAGATCAACTTGTAGAATTGATCCTACGTGATAGCAATATCAAGCAATTATGGGAAGGAAAAAAGTGTCTGCCTAATTTGAGAAATTTGGATCTGAGTCACTCCAAAAATCTTATTGAGGTGCCAGACTTAAGTGAGGTTCCACGTCTTACGGATCTTAGTCTCGAAGGATGTATACAACTAGTCCACATCCATCCATCCATTGGTATTCTGAGAGATCTTCGTCTTTTGAATTTGAAGAATTGTAAAACTCTTGTCCTTAATCTGAATATCCTTTTTGGGATCAGTTCTCTTGAGATATTAAATATCTCCGGCTGTTCACAATTACTTAATAGTAAGATGTTAATGGACCCAAGTGACACAAAACATTTGGAGAAAGTTGATAAAAATACAAATATCATCCAATTGCCAACATCCTCTGTATACAAACTTCTAATGTTGCCTTTCCATTTTTTCTACCCTCCAAAACCTCAAGATTCAATTGGTTCGTTATTGTCTTCTTTTTCTTTCTCTGTCCCGTGTTTGTTTAACCTTGACATAAGCTTCTGTAATCTACTTCAAATCCCAGATGAAATTGGGAACTTACGTTCTTTAGAAATATTAAATTTGGGGGGAAACAAATTTGTGACACTACCAAGCACCATCAAGCAACTTTCCTATCTTCATTATTTGAACTTGACACACTGCAAGGAGCTAAAATATTTGCCCGAGCTTCCAACAATACAAGAAAAAACAATTGACAGATACATTAGGGGCTTATACACTTTTGACTGCCCCAAGTTGAGTGATTTGGAACACTGTTATAGCATAGTTTTTTCTTGGATGAAGAAAAATCTTGAGGTTTACTTGGTCCCTCGGATGGAAATTGTTATTCCTGGAAGTGAAATTCCAAAATGGTTCAGTAAACAAAACGCAAGTGCATCCATAAGTATGGACCCATCTGCTGTTATAGATGACCCAAATTGGATAGGTGTTTCCATTTGTGTTCTATTTGTCACACACGAAAGTCCTATGAATTTGGGTGAAGGAGATTATCTTATAGACTCTCCTCTTTTTTACGGTGTCAATAATGTCAACTTTGAGACAAAATGGTATTCAGGAGTTCCTATAATATTCAAGAAAGATCTGGTGACAGTTGGGTTAGATTATTTGTTGATAGTGTTTTACTCTCGACAAGAATTCTTTCATCTTCTAAATGGACATTCAGATACCATGCATGATCTTCAAGCACTTAAATTTGAAACTTGGGGTAGGAGTCTTCTAGATTTACGTTTTATGGTGAAGAAGTGCGGGTATCGTTGGGTATTTAAGGAGGATCTTCAACAACTCAATTCAGACAAGTTTTTCAGCAGAAATTCTGCATCACGGAAGAGGAAGCTTCTAACAAGTGAGTAA 3213 0.3673 MASNKRQRSSSSHTKNFDVFVSFRGADTRNGFTNHLFAALERNGVVAFRDDQTIQKGNFLESELLLAIEGSRVFIVVFSKDYASSTWCMKELTKIVDWVEVTGRSLLPIFYDVTPSEVRKQSGEFAKAFAEHEERFKDDLEMVKGWRAALKTSCDRCGWDVQNKQQYEQIENVVEEVINILGRNQIWNFGDDLVDMHSRVKKLEELLDLSANDIVHLVGICGMGGIGKTTLATALFNKISPQFDACCYLDDLSKIYCNFGAASAQKQLLCRALNRGNIEIHNASHGTMLIRTRLCHLKALVVVDNVDQVEQLKKLGLQSEYLGAGSRIIIISRNRRILQNYGVNKVYEVQVLDXTXSLQLLXKKAFRSNDIGKEHEXLTLDILKYVNGLPLAIEVLGSFLLDRDVCEWRSALTRMEENPSKDIMDVLRISYDGLENIEKEIFLDIACFFSNNNLYSWEPTVKKLLDYRQFYSDIGMKVLIEKSLIRCQDETIIMHDLLKELGKSIVREKAPKEPRKWSRLWNYKDLQKVTKINKEAEKVEAILIEQHEKEFLQGRIRVDALSKMDHLEMLILQNVNCYGTLNFISNELRYLFWNHFPWLSLPSTFFPDQLVELILRDSNIKQLWEGKKCLPNLRNLDLSHSKNLIEVPDLSEVPRLTDLSLEGCIQLVHIHPSIGILRDLRLLNLKNCKTLVLNLNILFGISSLEILNISGCSQLLNSKMLMDPSDTKHLEKVDKNTNIIQLPTSSVYKLLMLPFHFFYPPKPQDSIGSLLSSFSFSVPCLFNLDISFCNLLQIPDEIGNLRSLEILNLGGNKFVTLPSTIKQLSYLHYLNLTHCKELKYLPELPTIQEKTIDRYIRGLYTFDCPKLSDLEHCYSIVFSWMKKNLEVYLVPRMEIVIPGSEIPKWFSKQNASASISMDPSAVIDDPNWIGVSICVLFVTHESPMNLGEGDYLIDSPLFYGVNNVNFETKWYSGVPIIFKKDLVTVGLDYLLIVFYSRQEFFHLLNGHSDTMHDLQALKFETWGRSLLDLRFMVKKCGYRWVFKEDLQQLNSDKFFSRNSASRKRKLLTSE* 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1110 1070 Gene3D - 351 435 IPR042197 -
Vra2g1110 1070 SUPERFAMILY L domain-like 494 843 - -
Vra2g1110 1070 ProSiteProfiles TIR domain profile. 15 181 IPR000157 GO:0007165
Vra2g1110 1070 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 159 IPR035897 -
Vra2g1110 1070 Gene3D Ribonuclease Inhibitor 552 732 IPR032675 -
Vra2g1110 1070 Gene3D Ribonuclease Inhibitor 733 886 IPR032675 -
Vra2g1110 1070 PRINTS Disease resistance protein signature 217 232 - -
Vra2g1110 1070 PRINTS Disease resistance protein signature 293 307 - -
Vra2g1110 1070 PRINTS Disease resistance protein signature 386 400 - -
Vra2g1110 1070 PRINTS Disease resistance protein signature 628 644 - -
Vra2g1110 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 445 IPR027417 -
Vra2g1110 1070 Gene3D - 181 350 IPR027417 -
Vra2g1110 1070 SMART till_3 16 156 IPR000157 GO:0007165
Vra2g1110 1070 Pfam C-JID domain 897 1046 IPR045344 -
Vra2g1110 1070 Pfam Leucine Rich Repeat 609 628 IPR011713 -
Vra2g1110 1070 Pfam TIR domain 16 177 IPR000157 GO:0007165
Vra2g1110 1070 Gene3D - 9 180 IPR035897 -
Vra2g1110 1070 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 190 846 - -
Vra2g1110 1070 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 880 1053 - -
Vra2g1110 1070 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 190 846 IPR044974 GO:0006952
Vra2g1110 1070 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 880 1053 IPR044974 GO:0006952
Vra2g1110 1070 Pfam NB-ARC domain 200 423 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1110 Vra-Chr2 13882603 13886972 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1110 12 830 WRKY Transcription Factor Family AT4G12020 29.833 2.88e-80 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1110 - - vra:106780706 1901.33