Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1108 ATGGAGAGCTTTGAAATCCTTGGTGCATGCCTTTTGTTCCTCTCTTTGTTATCCATTTCCTCCACTTTGGAGATGATTACTCCGACCAAACCCCTGAGAGATAGTATCAATGAGAATGTAACTCTTGTCTCAACCAATGGAACTTTTGAAGCAGGATTCTTCAGCCCTGGAAATTCCCGTAGCCGTTACCTTGGAATTTGGTACAAAACCATATCCCCCAGAACAGTGGTTTGGGTGGCCAACAAAGAAACACCACTTCAAGACCATTCTGGAGTCTTAGAACTAGACAGTGATCAAGGGTTTCTTAGTATAAGAAATGGCGGAGGAGCCAAAATATGGTCCTCAAATGCATCAAACACACCAAGCAAACCAGTTTTTGTGGAGTTGTTGGAATCAGGAAACATGGTTGTGAAAGATGGCCATGATAACTTTTTATGGGAAAGCTTTGATTACCCTGGTGATACTTTTCTTCCAGGAATGAAGCTTGGAATGAACTTGAAAACTGGTCATCAGCGAGCTCTGAGATCTTGGAAATCCCTCAACGATCCTAGTCCAGGTGAATTTTCATTTGGTGTTGATACTCGTGGCCTTCCTCAACTAGTTATCACGAAGAGTGATGACATAGTTTATAGACCAGGCTCTTGGAATGGTGTTAGAGTCACAGGAGTACCTGCACAAGAGGCTCACCCATTAACGAAATCCCTTTTTGTTATGAATGAAGATGAAATCTTCTATGAGATTCAAATCTTGAATAGTTCAACTAAACTGAGAAGCAGATTGCTCCCAGAAGGGTATCAAATACGTTTACTATGGTCAGATGAGGGTGAAAAATGGGATACTGTATACTCTGGTTCATTTGATGAGTGTGAGAGATATGGTATGTGTGGTGCTAATAGTATTTGCAACGTGAGTGGAGCACCTCAACACTGCGAATGTTTGAGTGGATTCAAATCCAAAGCTGCAGATTCAACTTGTGATCGAATTAGAGCTCTAGATTGCAACAAGGGAGATAGTTTTAAGAAGTACGAGGGAATGAAATTGCCAGACACATCTTCATCTTGGTATGATACGAGAATGAGTCTTGAAGAATGCGAGAAATTGTGCTTGAGCAACTGCTCTTGTACTGCGTATGCTCAATTGAATGTCAGTGACAACGGAAGTGGCTGCTTGCAATGGTTTAATGACATTGTTGACATGAGGACACTGGCACAGGATGGACAAGATTTTTATCTGCGAATTGCAGTTTCAAAATTTCAAGATCACGCCTTCAACAGGAAGATAGGAGGAATTATACTCGGCTGCACTATATTCATCATCGCCATTGTAGTATTTGTGTTCATATTTTGCCTTAGGAGGAATAAACTCGAGCAGTCAGAAACAAAATACTGGAAGGAGAAGAATAAGAAGGATGAGATTGATTTACCAATATTCGATTTTTTATACATCTGCAATGCCACAAATAACTTTTCTGAGAGTAATAAATTGGGACAAGGGGGATTTGGACCAGTGTACAAGGGCATATTATCAGATGGGCAAGAAATTGCAGTTAAGAGGCTTTCCAAAACTTCGGGACAAGGTTTGGACGAGTTTAAGAATGAAGTAATGTTGATTGCAAAACTTCAACACCGCAATCTGGTAAAGCTTCTTGGTTGTTCTTTTCAGCAAGAGGAAAAGCTGCTAATTTATGAATTCATGCCAAATAGAAGCTTGGATTACTTTATTTTTGATTCAACAAGAAGTACATCAATAGGTTGGGCTAAGAGATTTGAAATTATTGATGGAATTGCTAGAGGACTCCTCTATCTTCATCAAGATTCTAGACTGAAAATCATTCATAGGGATCTCAAGACTAGTAATGTTCTTCTTGACAGCAATATGAAACCAAAAATATCAGATTTTGGTATGGCTAGGACATTTAACCTAGATCAAGATGAAGCAAACACAAATAAAGTGATGGGAACATACGGTTATATGCCTCCCGAATATGCTGTGCATGGATCATTTTCAGTCAAATCAGATGTATTTAGTTTTGGGGTAATCGTATTGGAGATAATCAGTGGGAGGAAGAATAGAGGATTTCGTGACCCACACAATGAGCTAAATCTTCTTGGACATGCATGGAGATTATGGATTGAAAAAAGGCCAATGGAACTAATGGATGAGTCAATGGAGAATGCAGTTGGTCCATCTGAAATATTAAGATATATTCATATTGGTTTGTTGTGCGTACAACATAGACCAGAGGATAGACCGAACATGTCTTCGGTAGTTTTAATGTTGAACGGTGAAAAGTTATTGCCTGAGCCAAGTCAACCTGGATTTTACACGGGAAGAAATAACTTGACCATGACAGATTCTTCTTTAAGAAATTTGGATGCGTATTCTCTCAACGAAATGTCTGAGACATTGCTTCTGGCAAGATAG 2424 0.3944 MESFEILGACLLFLSLLSISSTLEMITPTKPLRDSINENVTLVSTNGTFEAGFFSPGNSRSRYLGIWYKTISPRTVVWVANKETPLQDHSGVLELDSDQGFLSIRNGGGAKIWSSNASNTPSKPVFVELLESGNMVVKDGHDNFLWESFDYPGDTFLPGMKLGMNLKTGHQRALRSWKSLNDPSPGEFSFGVDTRGLPQLVITKSDDIVYRPGSWNGVRVTGVPAQEAHPLTKSLFVMNEDEIFYEIQILNSSTKLRSRLLPEGYQIRLLWSDEGEKWDTVYSGSFDECERYGMCGANSICNVSGAPQHCECLSGFKSKAADSTCDRIRALDCNKGDSFKKYEGMKLPDTSSSWYDTRMSLEECEKLCLSNCSCTAYAQLNVSDNGSGCLQWFNDIVDMRTLAQDGQDFYLRIAVSKFQDHAFNRKIGGIILGCTIFIIAIVVFVFIFCLRRNKLEQSETKYWKEKNKKDEIDLPIFDFLYICNATNNFSESNKLGQGGFGPVYKGILSDGQEIAVKRLSKTSGQGLDEFKNEVMLIAKLQHRNLVKLLGCSFQQEEKLLIYEFMPNRSLDYFIFDSTRSTSIGWAKRFEIIDGIARGLLYLHQDSRLKIIHRDLKTSNVLLDSNMKPKISDFGMARTFNLDQDEANTNKVMGTYGYMPPEYAVHGSFSVKSDVFSFGVIVLEIISGRKNRGFRDPHNELNLLGHAWRLWIEKRPMELMDESMENAVGPSEILRYIHIGLLCVQHRPEDRPNMSSVVLMLNGEKLLPEPSQPGFYTGRNNLTMTDSSLRNLDAYSLNEMSETLLLAR* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1108 807 ProSiteProfiles Protein kinase domain profile. 489 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1108 807 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 12 799 - -
Vra2g1108 807 PIRSF SRK 2 807 IPR024171 GO:0004674
Vra2g1108 807 Gene3D - 26 149 IPR036426 -
Vra2g1108 807 Gene3D Phosphorylase Kinase; domain 1 462 564 - -
Vra2g1108 807 CDD PAN_AP_plant 331 414 - -
Vra2g1108 807 Gene3D Hepatocyte Growth Factor 330 412 - -
Vra2g1108 807 Pfam PAN-like domain 333 399 IPR003609 -
Vra2g1108 807 CDD STKc_IRAK 495 762 - -
Vra2g1108 807 Pfam D-mannose binding lectin 75 178 IPR001480 -
Vra2g1108 807 Pfam S-locus glycoprotein domain 210 319 IPR000858 GO:0048544
Vra2g1108 807 SMART serkin_6 489 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1108 807 ProSiteProfiles Bulb-type lectin domain profile. 27 150 IPR001480 -
Vra2g1108 807 SMART ntp_6 334 413 IPR003609 -
Vra2g1108 807 ProSitePatterns Serine/Threonine protein kinases active-site signature. 610 622 IPR008271 GO:0004672|GO:0006468
Vra2g1108 807 Gene3D Transferase(Phosphotransferase) domain 1 565 766 - -
Vra2g1108 807 CDD B_lectin 35 152 IPR001480 -
Vra2g1108 807 ProSiteProfiles PAN/Apple domain profile. 333 414 IPR003609 -
Vra2g1108 807 PANTHER - 12 799 - -
Vra2g1108 807 SMART blect_4 33 152 IPR001480 -
Vra2g1108 807 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 183 IPR036426 -
Vra2g1108 807 Pfam Protein tyrosine and serine/threonine kinase 492 758 IPR001245 GO:0004672|GO:0006468
Vra2g1108 807 SUPERFAMILY Protein kinase-like (PK-like) 473 760 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1108 Vra-Chr2 13837289 13842843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1108 419 775 Receptor kinase-like Gene Family AT4G23190 51.491 1.00e-125 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra2g1108 PK_Tyr_Ser-Thr 6.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1108 - - gmx:100802416 1249.96