Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1105 ATGGCTACTACAACAACAGAGCACGAGTCCTCATCAAGCGCCTCGCACGTGCTCAACTACACCCCCACCCCCACCACCTCCGACGACGACGAAGAGGAGGAGCATGGAGAAGGCAACGAGAACGACTCCCCCGGCATGGGTTGCTGGTCATCGGCGGCGTGCGACGGCGCTGGCCGGAGAGCGTTGGGGAAGGTGTTGGACCCGAGGGCGAAGTGGGTCCAGGAATGGAACAGAGTGTTCCTGCTAGTGTGCGGCGCGGGGTTGTTCGTGGACCCTCTTTTCTTCTACGCGCTATCCGTTAGCGACTCCTGCATGTGCGTTTTCGTTGACGGGTGGCTCGCCGTTACCGTGACGGTGCTGCGGTGCATGACAGACGCGCTTCACCTGTGGAACATGGTGATCAGAATGAAGATGGCCAAACGCGCGTTCGGGTTGGGAGCCGGCGCCAGGCTCAGAGACACACGGCCGGGCACCGTCGCGTTAGGGTATCTTAAGTCACGGACGGGATTCGTTTTTGATTTGTTCGTGATTCTTCCTCTGCCACAGATAGTGCTTTGGGTGGCAATTCCGTCGTTATTGGAGAAAGGTTCAGTGACGTTGGTGATGACAGTGTTCTTAATAATATTTCTGTTCCAATACCTTCCCAAAATTTATCATTCTGTTTGCCATCTACGACGCACGCAAAACCTCTCTGGCTACATTTTTGGAACAGTTTGGTGGGGAATCGCCCTTAACATGATAGCTTATTTTGTTGCTTCCCACGCAGCAGGGGCATGTTGGTACTTGCTGGGGATTCAAAGGGCAGCACAGTGTCTGAAAGTGCAGTGTGGAAAAACAAGTGGTTGTGGCACAAAGATTCTGTCATGTCAAAGCTCTGTATATTATGGAAGCAAGAGTTTGTTAGTTAGGGATAGAGCAAGGTTGGCTTGGGCAGAGAAAAGGGACGTGTGGCACACATGCTTGAAGGGCCCTGATGGCTACACCTATGGAGCTTATAGATGGACCGTTCAGCTTGTCACTAATGATAATCGTTTGGAGAAGATACTCTTCCCTATCTTCTGGGGCCTAATGACTCTTAGCACTTTTGGAAACCTAGAAAGTACAACAGAATGGTTAGAAGTGGTTTTCAACATCATTGTGCTGACCAGTGGCCTTCTTCTTGTAACTATGTTGATCGGAAACATTAAGGTATTTTTGCATGCAACAACGTCAAAGAAGCAAGCAATGCAACTGAAGATGAGGAACATTGAATGGTGGATGAGGAAACGAAGGTTGCCACAAGGGTTTCGACAACGTGTGCGTAATTATGAGAGACAACGTTGGGCTGCCATGAGAGGGGTCGATGAATGCGAGATGACCAGAAATCTTCCTGAAGGGTTAAGAAGAGACATCAAATACCATCTTTGCCTAGACTTGGTTAGACAGGTGCCTCTGTTTCAACACATGGACGAGCTGGTTCTGGAGAACATCTGTGACCGTGTGAAGTCTCTGATATTCACAAAGGGAGAAACAATAGCAAGAGAAGGAGACCCAGTTCAGAGAATGCTGTTTGTGGTAAGGGGCCACCTTCAAAGCAGCCAAGTTCTGAGGGATGGTGTGCAGAGTTGCTGCATGTTAGGGCCAGGAAACTTCAGTGGTGATGAGCTTCTTTCATGGTGTTTGAGGAGACCCTTCATCGAACGTCTTCCGCCATCTTCATCCACACTCATCACCTTGGAAACCACAGAGGCTTTTGGCCTTGAAGCCGACGACGTCAAATACGTCACCCAACATTTCAGGTATACTTTTGTCAAAGAAAAGGTCAAGAGAAGTGCCAGGTATTACTCACCAGGCTGGCGAACTTGGGCTGCCGTCGCCATTCAATTGGCTTGGAGAAGGTACAGGCATAGGTTGACTTTGACCTCTCTCTCCTTCATAAGACCTAGGAGACCCTTGTCAAGGTCCTCTTCCATGGGAGAAGATAGGCTTCGCCTCTACACTGCTTTGTTAACCTCACCAAAGCCTAATCAGGATGATTTTGACTTTTGA 2028 0.4961 MATTTTEHESSSSASHVLNYTPTPTTSDDDEEEEHGEGNENDSPGMGCWSSAACDGAGRRALGKVLDPRAKWVQEWNRVFLLVCGAGLFVDPLFFYALSVSDSCMCVFVDGWLAVTVTVLRCMTDALHLWNMVIRMKMAKRAFGLGAGARLRDTRPGTVALGYLKSRTGFVFDLFVILPLPQIVLWVAIPSLLEKGSVTLVMTVFLIIFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAQCLKVQCGKTSGCGTKILSCQSSVYYGSKSLLVRDRARLAWAEKRDVWHTCLKGPDGYTYGAYRWTVQLVTNDNRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRRLPQGFRQRVRNYERQRWAAMRGVDECEMTRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDELVLENICDRVKSLIFTKGETIAREGDPVQRMLFVVRGHLQSSQVLRDGVQSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEADDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPLSRSSSMGEDRLRLYTALLTSPKPNQDDFDF* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1105 675 SUPERFAMILY Voltage-gated potassium channels 68 399 - -
Vra2g1105 675 MobiDBLite consensus disorder prediction 1 25 - -
Vra2g1105 675 MobiDBLite consensus disorder prediction 1 47 - -
Vra2g1105 675 SMART cnmp_10 478 607 IPR000595 -
Vra2g1105 675 CDD CAP_ED 478 584 IPR000595 -
Vra2g1105 675 Gene3D Jelly Rolls 476 594 IPR014710 -
Vra2g1105 675 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 27 672 - -
Vra2g1105 675 ProSiteProfiles cAMP/cGMP binding motif profile. 478 588 IPR000595 -
Vra2g1105 675 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 27 672 - -
Vra2g1105 675 Pfam Ion transport protein 76 395 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vra2g1105 675 SUPERFAMILY cAMP-binding domain-like 404 592 IPR018490 -
Vra2g1105 675 Pfam Cyclic nucleotide-binding domain 499 586 IPR000595 -
Vra2g1105 675 Gene3D Helix hairpin bin 403 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1105 Vra-Chr2 13511201 13522404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1105 62 674 Ion Channels AT5G54250 79.032 0.0 999
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1105 K05391 - gmx:100796761 1191.79