Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1101 ATGGAGTTGAAGAGAATCGAGAACAAGATCAACAGATGCCGAGCTTGCTCTCATCATCTTCTCCACTACAGGAAAGTTGTACAAGTTTTGCAGCACTTCAAGGAGTTAAGCAGTCAACAAGAATATTTGAAGCTGAAAGCACGGTATGAAGCTCTACAACGTTTTCAAAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAATGAGCTTGAATCACTTGAAAGGCAGCTAGATTCGTCTTTGAAGCAAATCAGATCAACAAGGACCCAATTCATGCTGGATCAGCTTTCTGATAGTCAGCGCAAGGAACACTTGCTAGGTGAGGCAAACACAGCTCTCAGACAAAGGTGGGAAGAGTATCAAATAAATCAATTTCAACTGAATCCCAGTGGTGAAGATATACACTACACTGCAGCTGAGAGTTAG 432 0.4282 MELKRIENKINRCRACSHHLLHYRKVVQVLQHFKELSSQQEYLKLKARYEALQRFQRNLMGEDLGPLSSNELESLERQLDSSLKQIRSTRTQFMLDQLSDSQRKEHLLGEANTALRQRWEEYQINQFQLNPSGEDIHYTAAES* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1101 143 Coils Coil 72 92 - -
Vra2g1101 143 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 35 138 - -
Vra2g1101 143 PANTHER SERUM RESPONSE FACTOR HOMOLOG 35 138 - -
Vra2g1101 143 ProSiteProfiles K-box domain profile. 35 125 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra2g1101 143 Pfam K-box region 34 119 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1101 Vra-Chr2 13403718 13406404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1101 35 138 MADS-box Gene Family AT1G24260 64.762 8.45e-34 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1101 - - vra:106755771 286.574