Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1087 ATGAGAGAGGAGTCAATAGGGATAGTTATCGGGGTTTCCATAGGGGTAGTTATTGGACTGGTTTTGGCAATTTTTGCATTCTTCTGCCACAGGTATCATCGGAAGCGTTCACAGATAGGCAATAGCAGTTCTAGAAGGGCTGCTACCATTCCAATCCGCGCACATGGTGCTGATTCTTGCACCATTCTATCAGACTCAACCTTAGGTCCAGAGTCACCCATAAAGTCTGGAAGGTATGGCCTTCCCTTTTGGCTTGAAGGGTTTAAGAAGAGTAGTAACATGGTCCCAGCATCTGGCCTACCTGAATATGCATACAAGGATTTGCAGAAAGCAACACATAATTTTACAACAGTCATAGGACAAGGTGCATTTGGTCCGGTTTATAAAGCTCAGATGTCTACTGGTGAGATTGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCACACAGAGGTCATGTTGTTGGGAAGGTTACACCACAGAAATCTGGTGAATTTGGTTGGATATTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTATACATGAGTAATGGTAGCTTGGCATCCCACTTGTATTGTAGTGATGTAAATGAAGCACTGTGCTGGGATTTGAGGGTCAACATAGCTTTAGATGTGGCAAAAGGCTTGGAGTATCTTCATGATGGGGCAGTTCCCCCTGTAATCCATAGAGACATCAAATCTTCCAATATTCTGTTGGATCAATCCATGCGAGCCAGGGTTGCTGATTTTGGACTTTCAAGAGAAGAGATGGTGGACAAACATGCAGCCATTAGGGGTACCTTTGGCTATCTTGACCCTGAGTATATATCATCAGGAACATTCACCAAGAAAAGTGATGTATACAGTTTTGGAGTGTTGTTATTTGAAATTATAGCTGGCAGAAATCCTCAGCAGGGTCTTATGGAATATGTTGAGCTTGCAGCAATGAACATCGAGGGAAAAGTTGGGTGGGAAGAGATTGTGGATTCTCACCTTCAAGGAAACTTTCATGTGAAGGAACTGAATGAAGTTGCAGCAATAGCTTACAAATGCATCAACCGTGCACCAAATAAACGTCCTTCTATGAGGGACATTGTGCAAGTGTTAACAAGGATTCTTAAATCAAGGCACCATGGGAACCATCACAAGAATTCCTTGTCAGCCACAGATGAAGTTTTCATTGATCCTGACCAGCTAGAGACCATGATTTCAGTCACTGACCACAGGAGAGAAGAATCTAAGGATAATCCTGCGACAGAGGTGTACGATGAGTAG 1296 0.4282 MREESIGIVIGVSIGVVIGLVLAIFAFFCHRYHRKRSQIGNSSSRRAATIPIRAHGADSCTILSDSTLGPESPIKSGRYGLPFWLEGFKKSSNMVPASGLPEYAYKDLQKATHNFTTVIGQGAFGPVYKAQMSTGEIVAVKVLATNSKQGEKEFHTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVYMSNGSLASHLYCSDVNEALCWDLRVNIALDVAKGLEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDKHAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFEIIAGRNPQQGLMEYVELAAMNIEGKVGWEEIVDSHLQGNFHVKELNEVAAIAYKCINRAPNKRPSMRDIVQVLTRILKSRHHGNHHKNSLSATDEVFIDPDQLETMISVTDHRREESKDNPATEVYDE* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1087 431 SMART serkin_6 113 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1087 431 Pfam Protein tyrosine and serine/threonine kinase 115 376 IPR001245 GO:0004672|GO:0006468
Vra2g1087 431 SUPERFAMILY Protein kinase-like (PK-like) 101 391 IPR011009 -
Vra2g1087 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Vra2g1087 431 PANTHER OS01G0253100 PROTEIN 8 397 IPR045271 GO:0004714|GO:0006468
Vra2g1087 431 Gene3D Phosphorylase Kinase; domain 1 86 188 - -
Vra2g1087 431 ProSiteProfiles Protein kinase domain profile. 113 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1087 431 CDD STKc_IRAK 119 379 - -
Vra2g1087 431 Gene3D Transferase(Phosphotransferase) domain 1 189 401 - -
Vra2g1087 431 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 1 8 397 - -
Vra2g1087 431 MobiDBLite consensus disorder prediction 412 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1087 Vra-Chr2 12450217 12455106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1087 103 430 Glycoside Hydrolase AT3G07070 41.279 1.96e-73 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Vra2g1087 PK_Tyr_Ser-Thr 2.7e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1087 - - gmx:100785634 765.377