Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1085 ATGGAGAAGGAAGAGAAAAAGAAGATAAAGGGAAGCATTAAGGATAATATGCCAACAGTTTGGTTCTCTCTGAAGAAGTCTTTACACTGCAAATCTGAACCGTCTGATGTTCATGACCCCAAAACAAGGAAGCATTTGAGCACAATCTTGACCAAGAGAGCAGGGAGGTCAGGGTGTTCCAGGTCCATAGCAAATCTCAAGGATGTAATCCATGGAAGCAAGAGGCACCTTGATAAGCCACCAAGTTGCAGTCCAAGATCCATAGGGAGCAGCGAGTTCCTCAACCCCATAACTCATGAGGTGATTTTAAGCAACTCAAGGTGTGAGCTGAAGATAACTGGGTATGGAGGCTTCCAAGAAGGAGTTGGCAGTGGTGGTAGCAATGCTGGTGGAGGTAGTGGTGGTTCAACTTTTGTGGGGACTTTGAGGCCAGGGACTCCTGGCCCTGGAGGGCACCCTACAATGCATTACTTTAATCCTTCTTTTAGGACCTCATCCACCCCTCCAAGGAAATCTCCTTTCCTCTTATCAGATAAAGAAGGGTCTGGTCCTCCTGGGCTTCAACCCAGTACTAGGTTGTCTCTCGAGACAGATTCTAACGGGTCTTCAACTGTGACTTGCCACAAATGTGGAGAGCAATTCAACAAATGGGATGCTGCTGAAGCTCATCATCTGTCTAAGCATGCTGTGACTGAACTCGTGGAAGGAGATTCATCAAGGAAAATAGTGGAGATCATATGCAGGACTAGCTGGTTGAAGTCTGAAAACCAGTGTGGTAGAATTGAGCGAGTTTTGAAGGTGCACAACATGCAAAAGACTCTTGCAAGATTTGAAGAGTACAGGGAGATGGTGAAGATCAAAGCCAGCAAACTCCAGAAGAAGCATCCAAGATGTCTGGCTGATGGAAATGAACTTTTGAGGTTCTATGGCACTACTGTTGCATGTTCTCTTGGCCTTAATGGTTCTTCTAGTCTCTGCCTATCAGAAAAGTGCTGTGTTTGCAGAATCATAAGGAATGGCTTTTCAGCCAAGAAGGAGCTCAAGGGTGGCATTGGAGTCTTCACAACATCAACAAGTGGAAGAGCTTTTGAGTCCATAGAGATTTTTGGTGATGAACCATCACTGAGAAAAGCACTGATAGTGTGCAGAGTAATTGCTGGCAGGGTTCATAGGCCACTAGAAAACATTCAGGAAATGGCAGCACAAACAGGATTTGATTCATTGGCTGGGAAAGTTGGTCTATATTCAAACATTGAGGAGCTTTATTTGCTCAATCCTAGAGCTCTTCTTCCTTGCTTTGTGGTAATCTGCAAACCTTGA 1320 0.45 MEKEEKKKIKGSIKDNMPTVWFSLKKSLHCKSEPSDVHDPKTRKHLSTILTKRAGRSGCSRSIANLKDVIHGSKRHLDKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGYGGFQEGVGSGGSNAGGGSGGSTFVGTLRPGTPGPGGHPTMHYFNPSFRTSSTPPRKSPFLLSDKEGSGPPGLQPSTRLSLETDSNGSSTVTCHKCGEQFNKWDAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQCGRIERVLKVHNMQKTLARFEEYREMVKIKASKLQKKHPRCLADGNELLRFYGTTVACSLGLNGSSSLCLSEKCCVCRIIRNGFSAKKELKGGIGVFTTSTSGRAFESIEIFGDEPSLRKALIVCRVIAGRVHRPLENIQEMAAQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1085 439 MobiDBLite consensus disorder prediction 126 201 - -
Vra2g1085 439 PANTHER - 18 439 - -
Vra2g1085 439 Gene3D - 219 438 - -
Vra2g1085 439 SUPERFAMILY ADP-ribosylation 230 438 - -
Vra2g1085 439 MobiDBLite consensus disorder prediction 158 172 - -
Vra2g1085 439 MobiDBLite consensus disorder prediction 187 201 - -
Vra2g1085 439 ProSitePatterns Zinc finger C2H2 type domain signature. 207 228 IPR013087 -
Vra2g1085 439 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 18 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1085 Vra-Chr2 12360523 12363211 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1085 17 439 C2H2 Transcription Factor Family AT5G54630 68.683 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra2g1085 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1085 - - gmx:100787790 785.408