Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1081 ATGGAAACCGAGGGTGAAGAGCATGCTTCAAAATTGCTTCGAGCTCAAAATCATGTTTGGAATCATATTTTTAAATTCATAAATTCTCTGTCTCTTAAGTGTGCTATTGAGTTAAGCATACCAGATATCATACACAACTATGGCCAACCTATGCCACTCTCACAACTCATTGCTTCATTACCACTCCACCCATCCAAGACTTCCTTTATCACCCGCTTGATGAAAATTTTGACTCATTCTGGTTTCTTCTCTGAACACCATGCCAACCCAAATCAGCCTGATGTCATGTATCTCATAACTGATGCATCTATGTTACTCCTAAAGGACCATCCCTTTAGTATGAAATCTGTGACGCGATTAATATTTAATCCAGTTATGATCAATCCATGGTTTCAATTCTCTACCTGGTTCACAAATGAAACCCCTTCACCGTTTCACAGGGAAAATGGTATGGGATTTTGGGATTTTGCTGGACGTGAGCCTAATTTCAATAACCTTTTCAATGAAGTCATGGCTATGGACAGTCGATTGGTTTCCACTGTGGTGATTGAGAAGTATAAGAGATTGTTCGAGGGAATAGAATCATTGGTTGATGTTGGAGGAGGAACAGGGACAATGGCTAAGGTTATTGTTGAGTCCTTCCCACAGGTAAAGTGCATTGTATTTGATCTGCCACATGTTGTTGCAGGCTTGGAAGAATCTCAGAACATAAAATATGTCGGAGGAGACATGTTAGAAGCAATTCCTCAGGCTGATTCCATTATGTTGAAGATGATGATGTTGTTCGCTGCAAAAGAAAGATACGAGAAAGAGTGGGCCAACCTCATTTTCTCTGCTGGTTTTAGTAACTACAAGATTACTCCCACTCTGGGATTAGTGTCTATTATTGAGGTTTATCCATAG 903 0.3998 METEGEEHASKLLRAQNHVWNHIFKFINSLSLKCAIELSIPDIIHNYGQPMPLSQLIASLPLHPSKTSFITRLMKILTHSGFFSEHHANPNQPDVMYLITDASMLLLKDHPFSMKSVTRLIFNPVMINPWFQFSTWFTNETPSPFHRENGMGFWDFAGREPNFNNLFNEVMAMDSRLVSTVVIEKYKRLFEGIESLVDVGGGTGTMAKVIVESFPQVKCIVFDLPHVVAGLEESQNIKYVGGDMLEAIPQADSIMLKMMMLFAAKERYEKEWANLIFSAGFSNYKITPTLGLVSIIEVYP* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1081 300 Gene3D - 2 106 IPR036388 -
Vra2g1081 300 PANTHER ORCINOL O-METHYLTRANSFERASE 5 260 - -
Vra2g1081 300 PANTHER ORCINOL O-METHYLTRANSFERASE 256 300 - -
Vra2g1081 300 SUPERFAMILY "Winged helix" DNA-binding domain 9 111 IPR036390 -
Vra2g1081 300 Gene3D Vaccinia Virus protein VP39 256 300 IPR029063 -
Vra2g1081 300 Gene3D Vaccinia Virus protein VP39 107 255 IPR029063 -
Vra2g1081 300 Pfam O-methyltransferase domain 130 259 IPR001077 GO:0008171
Vra2g1081 300 PANTHER O-METHYLTRANSFERASE 256 300 IPR016461 GO:0008168
Vra2g1081 300 PANTHER O-METHYLTRANSFERASE 5 260 IPR016461 GO:0008168
Vra2g1081 300 PIRSF O-mtase 257 300 IPR016461 GO:0008168
Vra2g1081 300 PIRSF O-mtase 1 262 IPR016461 GO:0008168
Vra2g1081 300 Pfam Dimerisation domain 31 78 IPR012967 GO:0046983
Vra2g1081 300 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 300 IPR016461 GO:0008168
Vra2g1081 300 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 299 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1081 Vra-Chr2 12112997 12116982 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1081 30 257 Monolignol Biosynthesis Gene Families AT5G54160 30.603 1.69e-32 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1081 - K16040 gmx:100794122 378.637