Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1080 ATGGAGTGCAAGAGTGAAGAGCGTATCTCAAAACTACTTGGAGCTCAAACCCATGTTTGGAATCACATTTTCAGCTTCATAAATTCCATGTCTCTCAAATGTGCAATTGATTTGGACATACCTGACATCATACACAAGCACGGTGAACCCATGCCACTCTCACAACTCATTGCTTCAGTATCACTCCATCCTTCCAAAGCCAACTGCATCTACCGGTTGATGCGAATCTTGACCCATTCTGGCTTCTTCTCTGAAGTCAAAGTGAATGAGAATGAGCTTGAAGTGGGTTATGTGTTGACTGATGCATGCACTCTGCTACTTAAGGACAACCCCTTGAGCATGACACCTTTCTTGCATGCCATGCTTGATCCAATTTTGACAAAGCCCTGGCATGAATTGGCTACATGGTTCAGGAATGATGATCCCTCGCCATTCCAAACAGCACATGGGATGAAAATCTGGGACTACGCTGGGCGTGATCCAAAACTGAATAATCTTTTCAATGATGCGATGGCAAGTGACGCTGAATTGGTTGGCAATGTGGTGATTGAGAGGTGTGGAGGAGTGTTCAAGGGGTTGGAGTCAGTTGTTGATGTTGGGGGTGGCACAGGTACCATGGCAAAGGCAATTGCCAAATCATTCCCTCACATANACTGCACCGTCTTTGATCTCCCACATGTTGTTGCCGACTTACAAGGAGCTGACAACTTAAAATTTGTTGGAGGTGACATGTTTGAGTCAGTTCCTCCTGCAGATGCCGTTCTATTGAAGTGGATATTGCATGACTGGAATGACGAGCAGTGTGTGAGAATACTGAAGAAATGCAAGGAGGGAGTAAAGAGGAAGGTGATTGCGATAGACATGGTGTTGGAGAGTGAAAAGCTTGATTATGAATCAANTGAAACACAGCTCATGNNTGATATGGTTGTNATGGTGTTGTATCCTGGAAAAGAGAGNACCGAGNAAGAATGGGCTAAGATNATTTTNTCTGCTGGTTTCANTGACTACAAGATAACTCCANTNGTGGGTTTGAGNTCTCTCATCGAGATTTNTCCNTAA 1059 0.4363 MECKSEERISKLLGAQTHVWNHIFSFINSMSLKCAIDLDIPDIIHKHGEPMPLSQLIASVSLHPSKANCIYRLMRILTHSGFFSEVKVNENELEVGYVLTDACTLLLKDNPLSMTPFLHAMLDPILTKPWHELATWFRNDDPSPFQTAHGMKIWDYAGRDPKLNNLFNDAMASDAELVGNVVIERCGGVFKGLESVVDVGGGTGTMAKAIAKSFPHIXCTVFDLPHVVADLQGADNLKFVGGDMFESVPPADAVLLKWILHDWNDEQCVRILKKCKEGVKRKVIAIDMVLESEKLDYESXETQLMXDMVVMVLYPGKEXTEXEWAKXIXSAGFXDYKITPXVGLXSLIEIXP* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1080 352 CDD AdoMet_MTases 196 280 - -
Vra2g1080 352 Gene3D - 2 106 IPR036388 -
Vra2g1080 352 SUPERFAMILY "Winged helix" DNA-binding domain 10 111 IPR036390 -
Vra2g1080 352 Gene3D Vaccinia Virus protein VP39 107 352 IPR029063 -
Vra2g1080 352 PIRSF O-mtase 1 352 IPR016461 GO:0008168
Vra2g1080 352 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Vra2g1080 352 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 349 IPR029063 -
Vra2g1080 352 PANTHER O-METHYLTRANSFERASE 9 351 IPR016461 GO:0008168
Vra2g1080 352 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 352 IPR016461 GO:0008168
Vra2g1080 352 Pfam O-methyltransferase domain 130 333 IPR001077 GO:0008171
Vra2g1080 352 PANTHER O-METHYLTRANSFERASE 9 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1080 Vra-Chr2 12097019 12098309 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1080 30 350 Monolignol Biosynthesis Gene Families AT5G54160 33.537 2.23e-54 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1080 - K16040 gmx:100794122 596.275