Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1069 ATGACTCAGTGCAGTGACCCTAACATCATAGTGGAGGGACGAAAGGATAGCATAATTAGAACTTGTCCTACATGTGGTCATCATATCAAATGCCAAGAACAGGGAGGTGGAATTCATGACTTACCAGGACTTCCTGCTGGTGTGAAGTTTGATCCTACAGATCAAGAGATTCTTGAACATTTGGAAGCCAAGGTGCGATCTGATATTCATAAGCTTCATCCTCTCATTGATGAGTTTATTCCCACTCTTGAAGGCGAGAATGGAATCTGCTATACTCACCCAGAAAAGTTGCCAGGAGTTAGCAAAGATGGTCTGATCCGGCATTTCTTTCACAGGCCTTCAAAGGCATACACCACAGGAACAAGGAAGAGGAGAAAGGTGCATTCAGATGAAGATGGGAGTGAGACACGTTGGCATAAAACAGGTAAAACAAGGCCAGTCTACAACAGTGCCAAGTTGAAAGGGTACAAGAAAATCCTTGTACTTTACACAAACTATGGAAAACAAAGAAAGCCAGAGAAAACAAACTGGGTGATGCACCAATACCATCTTGGCAGTGATGAAGAGGAAAAAGAAGGGGAGTTAGTGGTGTCTAAAGTTTTCTACCAAACACAGCCTAGACAGTGCAGTTCCCTCATGAAAGACTCATCAGTTCCTGAGAAAAACATGAAGGGTCAAAGTGTTCATGAAGTGATCAATAGCAGAAACAAAAGCAACGGCTTTGTTGAGTATTACCATTCAAATTTCATCTCATTTGATCAAAGTGCTCAACACAGACCAACCACTGCTCAAGTAATTTCCCATTTTCCTGTGCATGAAGGTGCTTCTTTCAACATTCCTTGA 843 0.4211 MTQCSDPNIIVEGRKDSIIRTCPTCGHHIKCQEQGGGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHSDEDGSETRWHKTGKTRPVYNSAKLKGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGSDEEEKEGELVVSKVFYQTQPRQCSSLMKDSSVPEKNMKGQSVHEVINSRNKSNGFVEYYHSNFISFDQSAQHRPTTAQVISHFPVHEGASFNIP* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1069 280 MobiDBLite consensus disorder prediction 123 142 - -
Vra2g1069 280 Pfam No apical meristem (NAM) protein 45 184 IPR003441 GO:0003677|GO:0006355
Vra2g1069 280 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 277 IPR044799 GO:0003700
Vra2g1069 280 MobiDBLite consensus disorder prediction 118 143 - -
Vra2g1069 280 ProSiteProfiles NAC domain profile. 44 203 IPR003441 GO:0003677|GO:0006355
Vra2g1069 280 Gene3D NAC domain 53 207 IPR036093 GO:0003677|GO:0006355
Vra2g1069 280 SUPERFAMILY NAC domain 39 203 IPR036093 GO:0003677|GO:0006355
Vra2g1069 280 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1069 Vra-Chr2 11821199 11823871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1069 20 218 NAC Transcription Factor Family AT4G28500 79.000 4.02e-117 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra2g1069 NAM 1.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1069 - - gmx:100797459 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1069 2 11821199 11823871 Vra2g1069 2 11821199 11823871 ECH