Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1068 ATGCAAATTCAGAGAAAAACCCGAAACAAACGACCACTCCGAACACAACATATTTCTATCTTCAGCACAATGTTCGTGTTTTTTCTTTTCTTCCTCTTCCTTCTCTCTCCTCCGCGATTCTCTCTCTCTCTAACCCAAGACGGCCTTTTCCTCCTCCAGGCGCGCAGCCGCCTCTCCGACCCCCACAACTCACTCTCCTCCTGGAACCCCGCCACCTCCACCCCCTGCCAGTGGAGGGGCGTCACCTGCAACAATCATTCCTCCGCCGTCATCGCCCTCGATCTCTCTTACTCCTTCCTCGCCGGCCCCTTCCCCGCCGCCCTCTGCCGCCTCCCCTCCCTCTCTTCCCTTAACCTCTCTTACAACCTCATCAACTCCACCCTCTCCGCCGTCTCCCTCTGCCGCTCCCTCCTCCATCTCGACCTCTCCCAAAACGCCCTTGTGGGTCCCATCGACTCCCTCGCCGCACTCACCTCCCTCCGCTACCTCGACCTCTCCGGCAACAACCTCACCGGAGAAATTCCTGAGACCCTCACCGCCCTACCCCACCTCGAAACGCTAAACCTCGTTAGCAATCTTCTCACAGGTACCATCCCCGCTTCACTCGGTAACCTTACTTCGCTGAAACGCCTTCAACTTGCTTACAACTTGTTCAAGCCGGGTCCCATGCCGAGTGAACTCGGGAAACTCGGAAACCTTGAAACGCTTTTTCTCGCTCTCTGCAACCTTCAAGGTCCCATTCCAGACACCTTCAGCAATCTCGTTAACTTGACAAACCTCGACTTGTCTCAGAACAGCATCACCGGTAACATCCCGCAATGGTTCACGCGTTTCACGCGCGTGACCCAAATTGAGCTTTTCGAAAACTCGCTCTCCGGGGAGCTACCCAGAGGAATGTCGAAGATGACGAGTTTGAAACTATTCGACGCGTCGAGGAACGAGTTGACTGGGACGATTCCGACCGAGTTGTGTGAGTTGCCACTCCAGTCACTGAATTTATTTGAGAACAAACTCGAAGGGTTTTTGCCGGGGGCCATTGCGCGTTCCCCGAACCTCTCTGAACTCAAACTTTTCAGTAACAGACTCATTGGAACGTTGCCGAGTGATTTGGGAAGTAACTCACCGTTGAACCATATTGACGTTTCGTATAACCGGTTTTACGGTGAAATTCCGGCGAACATTTGCCGGCGGGGGCAGCTTGAGCAACTACTCTTGATATACAATTCTTTTTCGGGTGAAATTCCCGAGAGTCTCGGAAAATGCACCAGTTTAATGAGGGTTCGGTTAAGAAACAATAATCTCTCGGGAAGTGTTCCTGAAGGGGTTTGGAGTTTGCCCCGTTTGCATTTGCTTGAGCTTTTCGAAAATCATTTTTCTGGGCACATTTCTAAGGCGATTTCTGGCTCTTCCAGCTTGTCAAATTTGTTGGTTTCAAATAACCGGTTTTCTGGGTCGATTCCTGAGGAAATCGGGTTATTGGACAATCTTGTGGAGTTTGCTGGTAGTAATAATAATCTCTCGGGTCAGATTCCAGGTAGTTTGGTGAAGTTGAAGCAGTTGGTTAATCTCGACCTTAGTTCTAATAATCTTTCTGGTGATCTTAATTTTGGTGGAATTGGTCACTTGAGTAAGGTCACTGACCTTAATCTGTCACATAATAGGTTGGATGGAAATGTTCCAAGTGAATTAGGAAGCTTTCCTGTGCTTAATTATCTTGATCTTTCTTGGAACAATTTCTCGGGAGAGATCCCATTGCAGTTGCAAAATTTGAGACTATCTGAGCTGAACTTGTCTTACAACCAGCTTTCTGGGGATATTCCTCCTCTTTATGCCAATGCCAAGTACAAAACGAGTTTTATAGGGAATCCTGGTCTCTGTAGTAATCTCCCTGGGCTTTATAATTGTTATGGTAGGAATAAGAACTGGAGGCACACGTGGATTTTATGGTTCATTTTTGTGCTTGCTGGAGTTGTGTTCATTATTGGGGTGGCTTGGTTTTACTTCAGGTACAGGAAGTTGAAGAAATTGAAGAAAGGGTTATGCAGTTCGAGTTGGAAGTCGTTTCACAAGCTGCAGTTTAGTGGGTTAGAGGTTGCTAAGTTGCTGAATGAGGCCAATGTGATAGGAAAGGGAGCATCCGGGAAGGTGTACAAGGTGGTGCTCAGCAACGGTGAGGTGGTGGCAGTGAAAAAAATGAGTGTAGGAGCCCCAAAGAAAGTGGATGAAAATGGTGGTTCAAGAAAAGATGAATTTGAAGCTGAAGTAGAAGCACTTGGGAGGATCAGGCACAAGAATATTGTGAGGTTGTGGTGTTGCTGCAACAGTGGGAACGACAAGCTTTTGGTTTTTGAATACATGCCAAATGGGAGCTTGGGTGATTTGTTACAGGGTAGCAAGAAGAGCTTGTTGGATTGGCCTACAAGGTGTAAAATTGCTGTTGATGCTGCTGAGGGGCTTTCTTATTTGCATCATGATTGTGTCCCACCCATTGTCCACAGGGATGTGAAATCTAACAATATATTGGTTGATGAGGATTTTGTTGCAAAAGTTGCAGATTTTGGTGTTGCCAAAATGGTGACAAAAGCCGGCCAAGGGACAGAATCAATGTCTGTTATTGCAGGATCATACGGCTACATTGCACCAGAATACGCATACACTCTGAGGGTGAGTGAGAAGAGTGACATATACAGTTTTGGAGTGGTGATTTTGGAGTTGGTAACTGGGAGAGCCCCCATTGATCCAGAGTATGGTGAAAATGGTTTGGTGAAATGGGTTTCCTCTGCATTGGAACATGAAGGAGTCGATCATGTAGTTGATCCTACATTGGACTACAAATTCAGGGAAGAAATAAGCAAGGTGTTGAATGTGGGTCTGCAGTGCACCAGCTCCAACCCAATAACTCGCCCCACAATGAGAAAAGTGGTTAAAATGCTTCGTGAAGTGTAA 2946 0.4732 MQIQRKTRNKRPLRTQHISIFSTMFVFFLFFLFLLSPPRFSLSLTQDGLFLLQARSRLSDPHNSLSSWNPATSTPCQWRGVTCNNHSSAVIALDLSYSFLAGPFPAALCRLPSLSSLNLSYNLINSTLSAVSLCRSLLHLDLSQNALVGPIDSLAALTSLRYLDLSGNNLTGEIPETLTALPHLETLNLVSNLLTGTIPASLGNLTSLKRLQLAYNLFKPGPMPSELGKLGNLETLFLALCNLQGPIPDTFSNLVNLTNLDLSQNSITGNIPQWFTRFTRVTQIELFENSLSGELPRGMSKMTSLKLFDASRNELTGTIPTELCELPLQSLNLFENKLEGFLPGAIARSPNLSELKLFSNRLIGTLPSDLGSNSPLNHIDVSYNRFYGEIPANICRRGQLEQLLLIYNSFSGEIPESLGKCTSLMRVRLRNNNLSGSVPEGVWSLPRLHLLELFENHFSGHISKAISGSSSLSNLLVSNNRFSGSIPEEIGLLDNLVEFAGSNNNLSGQIPGSLVKLKQLVNLDLSSNNLSGDLNFGGIGHLSKVTDLNLSHNRLDGNVPSELGSFPVLNYLDLSWNNFSGEIPLQLQNLRLSELNLSYNQLSGDIPPLYANAKYKTSFIGNPGLCSNLPGLYNCYGRNKNWRHTWILWFIFVLAGVVFIIGVAWFYFRYRKLKKLKKGLCSSSWKSFHKLQFSGLEVAKLLNEANVIGKGASGKVYKVVLSNGEVVAVKKMSVGAPKKVDENGGSRKDEFEAEVEALGRIRHKNIVRLWCCCNSGNDKLLVFEYMPNGSLGDLLQGSKKSLLDWPTRCKIAVDAAEGLSYLHHDCVPPIVHRDVKSNNILVDEDFVAKVADFGVAKMVTKAGQGTESMSVIAGSYGYIAPEYAYTLRVSEKSDIYSFGVVILELVTGRAPIDPEYGENGLVKWVSSALEHEGVDHVVDPTLDYKFREEISKVLNVGLQCTSSNPITRPTMRKVVKMLREV* 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1068 981 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 24 981 - -
Vra2g1068 981 SUPERFAMILY Protein kinase-like (PK-like) 702 978 IPR011009 -
Vra2g1068 981 ProSitePatterns Serine/Threonine protein kinases active-site signature. 830 842 IPR008271 GO:0004672|GO:0006468
Vra2g1068 981 SUPERFAMILY RNI-like 284 648 - -
Vra2g1068 981 Gene3D Ribonuclease Inhibitor 299 636 IPR032675 -
Vra2g1068 981 Pfam Leucine rich repeat N-terminal domain 46 84 IPR013210 -
Vra2g1068 981 PANTHER RECEPTOR-LIKE PROTEIN KINASE 5 24 981 - -
Vra2g1068 981 Pfam Protein kinase domain 704 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1068 981 Pfam Leucine rich repeat 159 217 IPR001611 GO:0005515
Vra2g1068 981 Pfam Leucine rich repeat 232 291 IPR001611 GO:0005515
Vra2g1068 981 Gene3D Ribonuclease Inhibitor 43 192 IPR032675 -
Vra2g1068 981 Gene3D Ribonuclease Inhibitor 193 284 IPR032675 -
Vra2g1068 981 ProSiteProfiles Protein kinase domain profile. 702 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1068 981 SMART serkin_6 702 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1068 981 Gene3D Phosphorylase Kinase; domain 1 668 785 - -
Vra2g1068 981 ProSiteProfiles Leucine-rich repeat profile. 591 613 IPR001611 GO:0005515
Vra2g1068 981 ProSitePatterns Protein kinases ATP-binding region signature. 708 739 IPR017441 GO:0005524
Vra2g1068 981 Gene3D Transferase(Phosphotransferase) domain 1 786 981 - -
Vra2g1068 981 ProSiteProfiles Leucine-rich repeat profile. 159 182 IPR001611 GO:0005515
Vra2g1068 981 SMART LRR_typ_2 230 253 IPR003591 -
Vra2g1068 981 SMART LRR_typ_2 302 326 IPR003591 -
Vra2g1068 981 SMART LRR_typ_2 157 180 IPR003591 -
Vra2g1068 981 SMART LRR_typ_2 542 566 IPR003591 -
Vra2g1068 981 SMART LRR_typ_2 111 135 IPR003591 -
Vra2g1068 981 SMART LRR_typ_2 181 205 IPR003591 -
Vra2g1068 981 SMART LRR_typ_2 254 277 IPR003591 -
Vra2g1068 981 PRINTS Leucine-rich repeat signature 160 173 - -
Vra2g1068 981 PRINTS Leucine-rich repeat signature 517 530 - -
Vra2g1068 981 SUPERFAMILY L domain-like 67 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1068 Vra-Chr2 11795484 11798863 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1068 42 981 Receptor kinase-like Gene Family AT1G28440 57.203 0.0 1059
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra2g1068 Pkinase 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1068 - - gmx:100796415 1389.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1068 2 11795484 11798863 Vra2g1068 2 11795484 11798863 ECH