Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1066 ATGGGTGTGGATTACTACAAGATCTTGCAGGTTGATAAGAACGCCAAAGACGATGACTTGAAGAAGGCTTATAGGAAACTTGCTATGAAATGGCACCCGGATAAAAACCCCAACAACAAAAAGGAAGCCGAAGCTAAGTTTAAGCAGATTTCCGAAGCATACGAGGTGCTTAGCGATCCTCAAAAGAAAGCTATTTATGATCAATATGGAGAAGAGGGTCTGAAAGGTCAGGTTCCTCCTCCTGATGCTGGTGGTGCTGGAACTACATACTTTTCTACTGGAGATGTCCCCGGATCCTTTCGGTTCAATCCAAGGAATGCAGATGACATTTTTGCAGAATTTTTTGGCTTCTCGAGTCCATTTGGAGGAATGGGTGGGAGAGGTGGCGGTGGCGGCGGTGGCATGAGATCAAGGTTCCCTGGTGGGATGTTCGGTGATGATATGTTTGCATCTTTTGGGGATGGAGCGGTGCACATGAGTCAAGGTGCTCCTCGGAAAGCTGCTCCCATTGAGAACAAGTTGCCTTGCACTCTTGAGGAGATATATAGAGGAACTACAAAGAAGATGAAGATCTCTAGAGAAATTGCTGATGCCAGTGGCAAAACCATGCCAGTGGAAGAGATCTTAACCATTAATGTGAAGCCCGGTTGGAAAAAGGGAACAAAGATCACTTTCCCTGAAAAGGGAAATGAACAGCCAAATGTGACACCGGCCGATCTGGTCTTCATCATCGACGAAAAGCCACACGGTGTCTTCACCCGTGACGGAAATGACCTTGTTGTAACGCAGAAGATTTCCCTTGCAGAGGCCTTAACTGGTTATACAGTGCACCTCACCACCCTGGATGGTAGAAACTTAACCATACCAATCAGTAATGTTATTCATCCCAGTTATGAAGAGATTGTTCCAAGAGAAGGCATGCCACTTCCAAAAGATCCATCAAAGAAGGGAAACTTGAGGATAAAGTTTAACATCAAGTTTCCAACTAGGCTCACTGATGAGCAAAAAGCAGGAATCAAGAAGCTCTTGGCTGCATGA 1038 0.4547 MGVDYYKILQVDKNAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYEVLSDPQKKAIYDQYGEEGLKGQVPPPDAGGAGTTYFSTGDVPGSFRFNPRNADDIFAEFFGFSSPFGGMGGRGGGGGGGMRSRFPGGMFGDDMFASFGDGAVHMSQGAPRKAAPIENKLPCTLEEIYRGTTKKMKISREIADASGKTMPVEEILTINVKPGWKKGTKITFPEKGNEQPNVTPADLVFIIDEKPHGVFTRDGNDLVVTQKISLAEALTGYTVHLTTLDGRNLTIPISNVIHPSYEEIVPREGMPLPKDPSKKGNLRIKFNIKFPTRLTDEQKAGIKKLLAA* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1066 345 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 344 - -
Vra2g1066 345 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE 1 344 - -
Vra2g1066 345 Pfam DnaJ C terminal domain 170 328 IPR002939 -
Vra2g1066 345 CDD DnaJ 4 59 IPR001623 -
Vra2g1066 345 Gene3D - 249 329 - -
Vra2g1066 345 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Vra2g1066 345 SUPERFAMILY Chaperone J-domain 3 131 IPR036869 -
Vra2g1066 345 SUPERFAMILY HSP40/DnaJ peptide-binding domain 164 256 IPR008971 GO:0006457|GO:0051082
Vra2g1066 345 CDD DnaJ_C 168 331 - -
Vra2g1066 345 Gene3D DnaJ domain 3 125 IPR036869 -
Vra2g1066 345 Gene3D - 169 247 - -
Vra2g1066 345 PRINTS DnaJ domain signature 6 24 IPR001623 -
Vra2g1066 345 PRINTS DnaJ domain signature 24 39 IPR001623 -
Vra2g1066 345 PRINTS DnaJ domain signature 42 62 IPR001623 -
Vra2g1066 345 PRINTS DnaJ domain signature 62 81 IPR001623 -
Vra2g1066 345 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Vra2g1066 345 SMART dnaj_3 3 62 IPR001623 -
Vra2g1066 345 Pfam DnaJ domain 4 67 IPR001623 -
Vra2g1066 345 SUPERFAMILY HSP40/DnaJ peptide-binding domain 251 337 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1066 Vra-Chr2 11762713 11765779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1066 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 6.12e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1066 K09510 - gmx:100797487 593.193