Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1065 ATGCTTGCCGTGGCACCTTTGAGGAGCATCAAAGATGAAAAGAACCAAAGAGAGATGGAGGCAGCAAAAACGACATCAGATGATGATGACTTTGGTGAGCTTTCTGAAGGGAACTTATTGGAGAGCATCAACTTCGACGATCTCTTCGTCGGCATCGACGTTGGCGGAGATGTCTTGCCGGACTTGGAGATGTTTGGTGAGTTTTCCGTCAGCGCCGGGGAAGAGTCATCGGAGATGAACTCATCAGGAGAGAACAGCAAGGAGGAGAATGATCGAAACTGTGTTCTGACTGTTTCAAAGAAGGAAGTAGAGGAAGACAAAAGTTCTTGTGCTGCTTCAGGTCAAGACTCGGTGTCAAACCGAGGAGAGGAGATAGTGAGCAAGAATGGTGAATCGGTGGTGGTGAATCCTGCGCCAAAAGAAAGTGGAAAAGGAAGAAAATCTTCATCGGCTCAGTTGAAGAATAATAGTAATAGTAATAATCCTCAAGGGAAGAGAAAAGTGAAGGTGGATTGGACTCCAGAATTGCACAGGCGATTTGTGCAAGCTGTGGAACAGCTAGGAGTGGACAAGGCAGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGATTGTTTAACTCGTCATAACATAGCAAGCCACCTTCAAAAATATAGATCTCATAGGAAACACCTTCTGGCTCGTGAGGCTGAAGCAGCAAGTTGGAGTCAAAGGAGGCACATACATGGTGTTGGGAAGAGAGAGGTGAGTCCATGGCTAGCACCCACCATGGGATTCCCTCCTCCAATGACCACAATGCACCATTTTAGACCTCTACACGTGTGGGGGCACCCTTCCATGCACCATTCCTTCATGCACGTGTGGCCCAAACATCTTCCACCGTCACCACCACTCTCATGGCCATCACCTCCACCACCACAAGACCCTTCATTTTGGCACCAAACGGCTCCAAATGCTCTAATACCAGGAACAGCTTGTTTCCCACAACCTCTGACACCAACGGGTTTTGGAACTCACCATGTCCCTGGCATCCCACCCCATGCCATGTACAAAGCAGATCATACCATTGGCATCCATGGTCCTCGTCCTCTATTAGATTTTCACCCGTCAAAGGAGTGCATAGATGCAGCTATTGGAGATGTTTTATCAAAGCCATGGCTGCCCTTACCTCTTGGACTGAAGGCTCCAGCAATTGACAGTGTGATGAGTGAATTACAGAGACAAGGGATTCCAAACATTCCACCTTCCAGTGCTTGA 1257 0.4781 MLAVAPLRSIKDEKNQREMEAAKTTSDDDDFGELSEGNLLESINFDDLFVGIDVGGDVLPDLEMFGEFSVSAGEESSEMNSSGENSKEENDRNCVLTVSKKEVEEDKSSCAASGQDSVSNRGEEIVSKNGESVVVNPAPKESGKGRKSSSAQLKNNSNSNNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRHIHGVGKREVSPWLAPTMGFPPPMTTMHHFRPLHVWGHPSMHHSFMHVWPKHLPPSPPLSWPSPPPPQDPSFWHQTAPNALIPGTACFPQPLTPTGFGTHHVPGIPPHAMYKADHTIGIHGPRPLLDFHPSKECIDAAIGDVLSKPWLPLPLGLKAPAIDSVMSELQRQGIPNIPPSSA* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1065 418 MobiDBLite consensus disorder prediction 143 166 - -
Vra2g1065 418 MobiDBLite consensus disorder prediction 1 33 - -
Vra2g1065 418 MobiDBLite consensus disorder prediction 10 30 - -
Vra2g1065 418 Pfam Myb-like DNA-binding domain 170 219 IPR001005 -
Vra2g1065 418 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 164 223 IPR017930 -
Vra2g1065 418 MobiDBLite consensus disorder prediction 110 126 - -
Vra2g1065 418 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 418 - -
Vra2g1065 418 MobiDBLite consensus disorder prediction 70 170 - -
Vra2g1065 418 MobiDBLite consensus disorder prediction 81 109 - -
Vra2g1065 418 SUPERFAMILY Homeodomain-like 165 224 IPR009057 -
Vra2g1065 418 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 167 221 IPR006447 GO:0003677
Vra2g1065 418 Gene3D - 164 225 - -
Vra2g1065 418 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 418 IPR044825 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1065 Vra-Chr2 11681065 11685599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1065 1 359 G2-like Transcription Factor Family AT5G44190 40.152 4.16e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra2g1065 Myb_DNA-binding 5.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1065 - - vun:114168187 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1065 2 11681065 11685599 Vra2g1065 2 11681065 11685599 ECH