Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1055 ATGGTCGCCAAGGACAAAACGGTCATAAAGAATAAGAAGCCAACCAATGCCGCCGACGAGGTTCACTACCGCGGCGTCCGAAAGCGCCCCTGGGGCCGCTACGCCGCCGAGATCCGCGACCCCGGCAAGAAATCCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAGGAAGCCGCCAGAGCATATGACGCCGCCGCCCGCAACTTCCGCGGCCCCAAAGCTAAAACGAACTTCCCCCTTCTCCCCGACATCGTCGCCGCCGTCACCACCAACAACAACAACAACCTTAACCGGAACAACAACAACAACGTAACAAACAACGCTAGCAGCAGCAGCAGCCCTAGCCAGAGCAGCACCGTGGAGTCCGCCACTCCGGAGCGTGATGTCACGCGCCTCGCCGCCACTGCCGTCATCGACCGCTTCCCCTTCCTCCCGATCCAGCAGCAGCTGCTCGTGACCCCGGTGGCTCCCGTGCGCCCGGTTTTTCTCCTGGACCGGGCCCATTACCTGACCCACCAATTCCCCTTCCGGTTCGAACCGGCCCCGGTTCAGAGCGACTCCGATTCCTCCTCCGTTGTCGATTGCCAACCCAAAAGAGAACTCAATCTCGATCTCAACCTGGCTCCTCCTATGGATTATTAA 642 0.6106 MVAKDKTVIKNKKPTNAADEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARNFRGPKAKTNFPLLPDIVAAVTTNNNNNLNRNNNNNVTNNASSSSSPSQSSTVESATPERDVTRLAATAVIDRFPFLPIQQQLLVTPVAPVRPVFLLDRAHYLTHQFPFRFEPAPVQSDSDSSSVVDCQPKRELNLDLNLAPPMDY* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1055 213 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Vra2g1055 213 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Vra2g1055 213 MobiDBLite consensus disorder prediction 92 125 - -
Vra2g1055 213 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 120 - -
Vra2g1055 213 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Vra2g1055 213 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Vra2g1055 213 MobiDBLite consensus disorder prediction 1 20 - -
Vra2g1055 213 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Vra2g1055 213 MobiDBLite consensus disorder prediction 92 127 - -
Vra2g1055 213 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Vra2g1055 213 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 120 - -
Vra2g1055 213 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Vra2g1055 213 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1055 Vra-Chr2 11540168 11540975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1055 10 211 AP2-EREBP Transcription Factor Family AT5G44210 46.602 1.32e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra2g1055 AP2 5.9e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1055 K09286 - gmx:100801924 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1055 2 11540168 11540975 Vra2g1197 2 16215113 16216006 ECH
Vra2g1055 2 11540168 11540975 Vra2g1055 2 11540168 11540975 ECH
Vra2g1055 2 11540168 11540975 Vra10g1293 10 18302143 18303252 ECH