Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1054 ATGAGCACCATTTGTGCAGAGCACAAGTTCCAACTTCAACCCTCTCACCAGCTTCTCTCCCTCAAAAAATCCCTCAGAGACCTTGACATCCCGCCAAGGAAGCTTCTCACACGCCGCTCCGCAGCGGACATGTTTTCCGACGACATCCTCCTGCAAAAGTACCTCCACCACACCAAATCCATGGACTCCGACGACTCTGATGACGTCGGAGACCCTTATTCCTCCGACGAATTCCGCATGTTCGAGTTCAAGGTTCGTCGCTGCACTCGTAGCCGGAGCCATGACTGGACAGACTGCCCTTTTGCACACCCCGGCGAGAAGGCTCGCCGCCGCGACCCTCGCCGGTTTCATTACTCCGGGACGGTGTGTCCGGAGTATCGGCGCGGGCAGTGCAGCAGCGGCGATGCATGTGAGTTCTCTCATGGTGTGTTCGAGTGCTGGTTGCACCCTTCAAGGTATAGAACCGAGGCTTGCAAGGATGGGAAGAATTGCAAGCGAAAAGTTTGCTTTTTCGCTCACACCCCTCGCCAACTGAGGGTTTTGCCTCCCCAAGACAGCAACAAGAAGAAAAAGTGCAGCAATATGATGAGTCCTCATAATAATCATAATAATAACAACAATAACAGTAACCATTGTTGTTTGTTTTGTCATTGTTCATCTACCTGTTCACCAACTTCTACCTTGTTTGGCATGTCTCATTTTTCTCCTCCTTTATCACCCTCTTCCTCTTCCTCTGAGCCTGGCCACCGTCATGGTGTGGTGAGCTACAAGGATGTGTTGTCTGAGCTTATGTGCTCCATGGAGGCTTTGAATTTTGGTGAGGCTTCATCTGTGTCTGCTTCCAAGCCTCACACTCTGTCTTGGCTTGATGTCTCTGAGGATCATAAACAGTTCAATGTTCATTCACCAACCATGGCTACTTGTCAAAGCTTTTCCATGAATAGAAATGGAAGATTTTTTAGGGAAGAAAGTGGTGGGGTTGTTGATGATGTCATTGCCCCAGATCTCGCGTGGGTTAATGACTTGCTGATGTAG 1035 0.4966 MSTICAEHKFQLQPSHQLLSLKKSLRDLDIPPRKLLTRRSAADMFSDDILLQKYLHHTKSMDSDDSDDVGDPYSSDEFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEYRRGQCSSGDACEFSHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHTPRQLRVLPPQDSNKKKKCSNMMSPHNNHNNNNNNSNHCCLFCHCSSTCSPTSTLFGMSHFSPPLSPSSSSSEPGHRHGVVSYKDVLSELMCSMEALNFGEASSVSASKPHTLSWLDVSEDHKQFNVHSPTMATCQSFSMNRNGRFFREESGGVVDDVIAPDLAWVNDLLM* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1054 344 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 142 IPR000571 GO:0046872
Vra2g1054 344 PANTHER UNKEMPT FAMILY MEMBER 27 343 IPR045234 -
Vra2g1054 344 Gene3D - 117 181 - -
Vra2g1054 344 SMART c3hfinal6 152 175 IPR000571 GO:0046872
Vra2g1054 344 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Vra2g1054 344 ProSiteProfiles Zinc finger C3H1-type profile. 118 144 IPR000571 GO:0046872
Vra2g1054 344 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 27 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1054 Vra-Chr2 11508901 11510421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1054 73 247 C2H2 Transcription Factor Family AT5G12850 49.143 2.39e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra2g1054 zf-CCCH 9e-05 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1054 2 11508901 11510421 Vra2g1054 2 11508901 11510421 ECH