Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1047 ATGTCTTTTAACGCCATTGTTCAATACACTATTTCTTCATCTCATGCAATTAACAGATATGATGTATTTGTGAGCTTCTGTGGTGAAGACACACGCAACAATTTCACTGGTTTTCTCTTTCAAGCTCTCCGTAGAAAAGGCATCGATGCCTTTAAAGATGATGAAGATCTCAAAAAAGGTGAATCTATAGCTCCCGAGCTCCTCCATGCCATTCAAAGCTCTCGACTTTTCATTGTTGTCTTCTCAAAGAACTATGCTTCCTCCACCTGGTGCTTGCGTGAACTGGCAGCGATACGTAACTGCGTTCAAACTTCCCCAAGACCTGTTATACCTGTCTTTTATGACGTTGATCCTTCGGTGGTGCGCAAACAAAGTGAATGTTATGAGAATGCATTTGCAGAACACGAAAAGAGATTCAGAGAAGACAAAGCCAAGATGGAGGAAGCTGAGAGATGGAGAGAAGCTCTCACACAAGTGGCCAATCTCTCTGGTTGGGATATTCGAAATAAGTCACAGTATGCACAAATTGAAGAAATTGTTCAAAACATAACAAATATTTTGGGTCCAAAAATTTGTAGTCTTCCAAAGGATGAACTAGTTGGGATAGAGCGTGGACTTGAAATATTGGCAAATCTTGTATGTTTTGAGTCATTTAATAATGTTCGAGTTGTTGGAATCAGTGGGATGGGTGGCATAGGAAAGACTACTCTTGCTCGAGCTTTATACGAAAAAATCTATCATCAATATGATTTTCATTGTTTCATTGATGATGTAAGCAAAATATATCGAGATTCAAGTTCATTAGGTGTACAAAAGCAGTTAATTTCTCAGTTTCTAAATGAGAAAAATCTAGAGATTTCAAATTCTTTTGAGGGAACATGTTTGATGTGGTCTAGGCTACACAATGTTAAGGCACTTGTAGTTCTGGACAACATTGATGAAGTTGAACAACTAAGGATATTTACAGGGAACAGAGACACTTTGTTGCGTGAATGCTTAGGTGGAGGGAGCATAATCATCGTAGTTTCTAGGGATGAACATATATTGAGGACACATGGAGTAGATGACATTTATCAAGTCCAACCATTGAATTACGAATATGCTATGCAACTGTTTTGTAGAAATGCATTCAAAGTTAATCATATTTTGAGTGATTACGAAAAGTTGGCATGGGATATACTATCTTATGCTCAGGGCCACCCCTTAGCAATTAAAGTAATTGGGTCATCTTTGTTTCGTCGAAATGTGTCACAATGGGAAAGTGCATTGGCCAGGCTAAAAGAAAAAAAAAGTAAACATATTATGGATGTTTTGCGTATAAGTTTTGATCAGCTGGATGANGAAGACAAACAAATATTTTTGGATATTGCATGTGCCCTATACTATTATGATGAGAAATATGTGACGGAAGTTCTAAAGTTTCGTGGATTTCATCCTGAATATGGTCTACAAGTTTTGCATGACAANTCACTAATATCAAAAATGGGTAGGTGTATTTATATGCACAACTTGTTGAAGGACTTGGGCNGGNATATTGTCAAAGAAGAATCACCAAAGGAACCCCTAAAGAGGAGTAGGTTGTGCAATTACCAAGATTTCCTCAAAGCTATGTCGAAAAATCAGACAACTGAAATTCTTGAAGTTGTAGCTGTAAATTCATATGGGAGTTCTAAAACTGTGAGGGTAGATGGTCTATCGAAAATTAAACACCTTAAGTTTCTTAGACTTGAGAACATGAACTGTTCAGGAAGTCTCAGTCATCTCTCCAGTGAACTAGGATATCTTATTTGGAACAATTATCCTTTTGAGTGTTTGCCTAAAAGTTTTCAGCCACACAAACTAGTTAAGTTAAAATTGAAAGGGAGCAGTATTCAACGACTATGGAGTGGCACAAAGGTGCTACCTAATTTGAAGCGTTTGGATCTCTCTTACTCCAAAGAATTAGTTGAGATGCCAGATGTTGCAGAGGCCCTAAATCTTGAAGGCATAGACCTTGAAGGATGCATACAGCTCCGAAAACTCAGTCCGTCGATTGGTCTTCTGAGCAAGCTTACTACTTTGAATTTGAAAAACTGTGAAAACTTAGTAAGCTTACCCAATAGCATATTGAGCCTGAACTCTCTTGAATATCTGAGTGTCTATGGTTGTTCAAATCTGTTTAATAATGAGTTATTAGATGAAGCAAGTAACACAGAGCATTTGAAGAAGCTTTGTTCACTTAAAGGTCCTATTGAGTCCCACTCAACATCCCCTTTAATAAAAAAAGCACGAAGAGAGTCAGTTAGTTGTTTGTTACCCTCCTCTCCTACTCTTTCTTGTTTGCGTGAACTCGATCTAAGATTCTGTAACTTAGTTAAAATCCCTGATGCCATTGGAAAGTTAAGTTGCTTAGAAAAGTTAAATTTGAAGGGAAACAATTTTGTTACATTGCCTAACCTCAAGGACCTTTTCAGACTTTATTATTTAAACTTAGAGGATTGCAAGAGGTTGAAATACTTGCCTGTCCTCCCTTCACGAACTCACTTGCCCTTAAATCTTTACTCGTATCTATTGCAATATTTTGAAGACTTTATCTATCAGGTGCCAAACGAAGATGAATTTATGGCTGGATTAACGATGTTCAACCGCCCAAAAATAGTTGAGAGGGAACGGTGCACTAGCATGACTGTTTCATGGATGCTACAAATTATCCAGGTGTGCATGTTTCTTCCTTACACTTACCATCTTTTAATCTCTTTTGGTGTTGAAAAACAACTACTAATGCATAACATAACTCAGTCGTGGTACAACTCGGAATATCTGTCCTTTTCTTCAAGTCTTCGAAGTATTATCCCCGGAAGTGAAATACCAATGTGGTTCAACAATCAGCTTCTGAGCATGGACAATTCAATAATCATAGATGTCTCTCCTTTTGTGCATGACAATAATTGGGTTGGTGTTGTATGTTGTGCAATACTCGGTGAAAATCTTTACAGAACAAGAATTCTTGAGGATTTGAGAAGGGATCTATTTGTGGAGCACTCAGATCATATGTGCCTATTTTATTACTCTCGTCAACAGTTCTGCCATGAAGAAGGCATATTTTGGGGCAAACTTAATACACATGACTTGAGTTTGACATTTAAATTACATGACGTGATAATACTTTGTGCAAACATGAAGGATAGGGACGAGGGATTTTATGAGTTTGAAGTGAAAAAATACGGGTATCGGTGGGTTAAAAAGCAAGATCTACAATGA 3240 0.375 MSFNAIVQYTISSSHAINRYDVFVSFCGEDTRNNFTGFLFQALRRKGIDAFKDDEDLKKGESIAPELLHAIQSSRLFIVVFSKNYASSTWCLRELAAIRNCVQTSPRPVIPVFYDVDPSVVRKQSECYENAFAEHEKRFREDKAKMEEAERWREALTQVANLSGWDIRNKSQYAQIEEIVQNITNILGPKICSLPKDELVGIERGLEILANLVCFESFNNVRVVGISGMGGIGKTTLARALYEKIYHQYDFHCFIDDVSKIYRDSSSLGVQKQLISQFLNEKNLEISNSFEGTCLMWSRLHNVKALVVLDNIDEVEQLRIFTGNRDTLLRECLGGGSIIIVVSRDEHILRTHGVDDIYQVQPLNYEYAMQLFCRNAFKVNHILSDYEKLAWDILSYAQGHPLAIKVIGSSLFRRNVSQWESALARLKEKKSKHIMDVLRISFDQLDXEDKQIFLDIACALYYYDEKYVTEVLKFRGFHPEYGLQVLHDXSLISKMGRCIYMHNLLKDLGXXIVKEESPKEPLKRSRLCNYQDFLKAMSKNQTTEILEVVAVNSYGSSKTVRVDGLSKIKHLKFLRLENMNCSGSLSHLSSELGYLIWNNYPFECLPKSFQPHKLVKLKLKGSSIQRLWSGTKVLPNLKRLDLSYSKELVEMPDVAEALNLEGIDLEGCIQLRKLSPSIGLLSKLTTLNLKNCENLVSLPNSILSLNSLEYLSVYGCSNLFNNELLDEASNTEHLKKLCSLKGPIESHSTSPLIKKARRESVSCLLPSSPTLSCLRELDLRFCNLVKIPDAIGKLSCLEKLNLKGNNFVTLPNLKDLFRLYYLNLEDCKRLKYLPVLPSRTHLPLNLYSYLLQYFEDFIYQVPNEDEFMAGLTMFNRPKIVERERCTSMTVSWMLQIIQVCMFLPYTYHLLISFGVEKQLLMHNITQSWYNSEYLSFSSSLRSIIPGSEIPMWFNNQLLSMDNSIIIDVSPFVHDNNWVGVVCCAILGENLYRTRILEDLRRDLFVEHSDHMCLFYYSRQQFCHEEGIFWGKLNTHDLSLTFKLHDVIILCANMKDRDEGFYEFEVKKYGYRWVKKQDLQ* 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1047 1079 CDD AAA 200 251 - -
Vra2g1047 1079 Gene3D Ribonuclease Inhibitor 757 854 IPR032675 -
Vra2g1047 1079 ProSiteProfiles TIR domain profile. 18 187 IPR000157 GO:0007165
Vra2g1047 1079 SMART till_3 19 162 IPR000157 GO:0007165
Vra2g1047 1079 ProSiteProfiles Leucine-rich repeat profile. 796 817 IPR001611 GO:0005515
Vra2g1047 1079 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 901 IPR044974 GO:0006952
Vra2g1047 1079 Gene3D Ribonuclease Inhibitor 536 740 IPR032675 -
Vra2g1047 1079 Pfam NB-ARC domain 221 432 IPR002182 GO:0043531
Vra2g1047 1079 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 15 901 - -
Vra2g1047 1079 Gene3D - 192 355 IPR027417 -
Vra2g1047 1079 Pfam TIR domain 20 191 IPR000157 GO:0007165
Vra2g1047 1079 PRINTS Disease resistance protein signature 223 238 - -
Vra2g1047 1079 PRINTS Disease resistance protein signature 299 313 - -
Vra2g1047 1079 PRINTS Disease resistance protein signature 397 411 - -
Vra2g1047 1079 PRINTS Disease resistance protein signature 632 648 - -
Vra2g1047 1079 SUPERFAMILY Toll/Interleukin receptor TIR domain 19 165 IPR035897 -
Vra2g1047 1079 SUPERFAMILY L domain-like 501 842 - -
Vra2g1047 1079 Gene3D - 17 190 IPR035897 -
Vra2g1047 1079 Gene3D - 363 446 IPR042197 -
Vra2g1047 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 456 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1047 Vra-Chr2 11420909 11425256 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1047 220 837 WRKY Transcription Factor Family AT5G45050 32.357 5.34e-76 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1047 - - vra:106755397 1623.99