Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1046 ATGTCTTCCAACGCCATCGTCCAATACACTGCTTCTTCATCTCATGCAATTAACAGATACGATGTATTTGTGAGCTTCCGTGGTGAAGACACACGTAACAACTTCACTGGTTTTCTCTTTCAAGCTCTCCGTAGAAAAGGCATCCATGCCTTCAAAGATGATGAAGATCTCAAAAAAGGTGAATCCATAGCACCCGAGCTCCTCCATGCTATTCAAAGCTCTCGACTTTTCATTATTGTCTTCTCAAAGAACTATGCTTCCTCCACCTGGTGCTTGCGTGAACTGGCAGAGATACGTAACTGCGTTCAAACTTCGCCCAGACCTGTTATACCTGTCTTTTATGACGTTGATCCTTCGGTGGTGCGCAAACAAAGTGAATGTTATGAGAAAGCATTTGCAGAACACGAAAAGAGATTCAGAGAAAACAAAGCGAAGATGGAGGAAGCTGAGAGATGGAGAGAAGCTCTCAAAGAAGTGGCCGATCTCTCTGGTTGGGATATTCGAAATAAGTCACAGTATGCACAAATTGAAGAAATTGTTCAAAACATAACAAATATTTTGGGTCCAAAAATTTGTAGTCTTCCAAAGGATGAACTAGTTGGGATAGAGCGTGGACTTGAAATATTGGCAAATCTTGTATGTTTTGAGTCATTTAATAATGTTCGAGTTGTTGGAATCAGTGGGATGGGTGGCATAGGAAAGACTACTCTTGCTCGAGCTTTATACGAAAAAATCTATCATCAATATGATTTTCATTGTTTCATTGATGATGTAAGCAAAATATATCGAGATTCAAGTTCATTAGGTGTACAAAAGCAGTTAATTTCTCAGTTTCTAAATGAGAAAAATCTAGAGATTTCAAATTCTTTTGAGGGAACATGTTTGATGTGGTCTAGGCTACACAATGTTAAGGCACTTGTAGTTCTGGACAACATTGATGAAGTTGAACAACTAAGGATATTTACAGGGAACAGAGACACTTTGTTGCGTGAATGCTTAGGTGGAGGGAGCATAATCATCGTAGTTTCTAGGGATGAACATATATTGAGGACACATGGAGTAGATGACATTTATCAAGTCCAACCATTGAATTACGAATATGCTATGCAACTGTTTTGTAGAAATGCATTCAAAGTTAATCATATTTTGAGTGATTACGAAAAGTTGGCATGGGATATACTATCTTATGCTCAGGGCCACCCCTTAGCAATTAAAGTAATTGGGTCATCTTTGTTTCGTCGAAATGTGTCACAATGGGAAAGTGCATTGGCCAGGCTAAAAGAAAAAAAAAGTAAACATATTATGGATGTTTTGCGTATAAGTTTTGATCAGCTGGATGANGAAGACAAACAAATATTTTTGGATATTGCATGTGCCCTATACTATTATGATGAGAAATATGTGACGGAAGTTCTAAAGTTTCGTGGATTTCATCCTGAATATGGTCTACAAGTTTTGCATGACAAATCACTAATATCAAAAATGGGTAGGTGTATTTATATGCACAACTTGTTGAAGGACTTGGGCAGGTATATTGTCAAAGAAGAATCACCAAAGGAACCCCTAAAGAGGAGTAGGTTGTGCAATTACCAAGATTTCCTCAAAGCTATGTCGAAAAATCAGGTAAAATTAATAGATTCAATTATAATTTTACGTTGCTATTTTTTTAGAAGTTCTAAAACTGTGAGGATAGATGGTCTATCGAAAATTAAACACCTTAAGTTTCTTAAACTTGTGGGAGTGAACTGTTCAGGAAGTCTCAGTCATCTTTCCAGTGAGTTAGGATATCTTACATGGAACAAATATCCTTTTGAGTGTTTGCCTCAAAGTTTTCAGCCACACAAACTAGTGAAGTTAAAATTGAGAGAGAGCAGTATTCAACGACTATGGAGTGACACAAAGGTGCTACCTAATTTGAAGCTTTTGGATCTCTCTTACTCCAAAGAATTAGTTGAGATGCCAGATGTTGCAGAGGCCCTAAATGTTGAAGAAATAGTTCTTGAAGGATGCATACAGCTCCGAAAACTCAGTCCATCGATTGGTCTTCTGAGCAAGCTTACTATTTTGAATTTGAAAGACTGTGAAAACTTAGTAAGCTTACCTAATAGCATATTGGGCCTGAATTCTCTTGAATATCTGAGTGTCTATGGTTGTTCAAATCTGTTTAATAATGAGTTATTAGATGAAGCAAGTAACACAGAGCATTTGAAGAAGCTTTGTTCAGTTGAAGGTCCTATTCATTCCCACTCAATATTCCCTTCAATGAAAAAAGCACGAAGAGAGTCAGTTAGTTGTCTATTACCATCCTCTCCTATTCTCCCTTGTTTGCGTGAACTCGATCTAAGATTTTGTAACTTAGTTAAAATTCCTGATGCTATTGGAAAGTTAAGCTGCTTAGAAAAGCTAAATTTGAAGGGAAACAATTTTGTTACATTGCCTAACCTCAAGGACCTTTTCAGACTTTATTATTTAAACTTACAATGCTGCAAGCGATTGAAATACTTGCCTGACCTCCCTTCACGAACTCACTTGCCCTTAAATCTTTACTCGTATCCGATGCAATATATTGAAGACTACTTTCGTATAGAGGACCGTAAAGATTATCCTGGATTAATGATGTTCAACTGCCCAGAAATAGTTGAGAGGGAACGGTGCACTAGCATGACTATTTCATGGATGCTACAAATTCTTCAGTCGTGGTACAAGTCGGAATGTCTTTCCTTTTCTTCAAGTCTTCGAAGTATTATCCCCGGAAGTGAAATACCAATGTGGTTCAACAATCAGCTTCTGAGCATGGACAATTCAATAATCATAGATGTCTCTCCTTTTGTGCATGACAATAATTTGATTGGTGTTGTGTGCTGTGCAATACTCAGTGAAGATTTTTACAGAACAAGAATATCTGTGGAGCACTCAGATCATGTGTGCCTATTTTATTACTCTCGTCAACAGTTCTGCGATAAAGAAGGCATATTTCGGGGCAAACTTAATACACATGACTTGAGTTTGAAATTTAAATTACATGACGTGGTAATCCTTTGTGCAAAGATGAAGGATAGGGACGAGGGATGTTATGAGTTTGAAGTGAAAAAATACGGGTATCGGTGGGTTAAAAAGCAAGATCTACACTGA 3132 0.3748 MSSNAIVQYTASSSHAINRYDVFVSFRGEDTRNNFTGFLFQALRRKGIHAFKDDEDLKKGESIAPELLHAIQSSRLFIIVFSKNYASSTWCLRELAEIRNCVQTSPRPVIPVFYDVDPSVVRKQSECYEKAFAEHEKRFRENKAKMEEAERWREALKEVADLSGWDIRNKSQYAQIEEIVQNITNILGPKICSLPKDELVGIERGLEILANLVCFESFNNVRVVGISGMGGIGKTTLARALYEKIYHQYDFHCFIDDVSKIYRDSSSLGVQKQLISQFLNEKNLEISNSFEGTCLMWSRLHNVKALVVLDNIDEVEQLRIFTGNRDTLLRECLGGGSIIIVVSRDEHILRTHGVDDIYQVQPLNYEYAMQLFCRNAFKVNHILSDYEKLAWDILSYAQGHPLAIKVIGSSLFRRNVSQWESALARLKEKKSKHIMDVLRISFDQLDXEDKQIFLDIACALYYYDEKYVTEVLKFRGFHPEYGLQVLHDKSLISKMGRCIYMHNLLKDLGRYIVKEESPKEPLKRSRLCNYQDFLKAMSKNQVKLIDSIIILRCYFFRSSKTVRIDGLSKIKHLKFLKLVGVNCSGSLSHLSSELGYLTWNKYPFECLPQSFQPHKLVKLKLRESSIQRLWSDTKVLPNLKLLDLSYSKELVEMPDVAEALNVEEIVLEGCIQLRKLSPSIGLLSKLTILNLKDCENLVSLPNSILGLNSLEYLSVYGCSNLFNNELLDEASNTEHLKKLCSVEGPIHSHSIFPSMKKARRESVSCLLPSSPILPCLRELDLRFCNLVKIPDAIGKLSCLEKLNLKGNNFVTLPNLKDLFRLYYLNLQCCKRLKYLPDLPSRTHLPLNLYSYPMQYIEDYFRIEDRKDYPGLMMFNCPEIVERERCTSMTISWMLQILQSWYKSECLSFSSSLRSIIPGSEIPMWFNNQLLSMDNSIIIDVSPFVHDNNLIGVVCCAILSEDFYRTRISVEHSDHVCLFYYSRQQFCDKEGIFRGKLNTHDLSLKFKLHDVVILCAKMKDRDEGCYEFEVKKYGYRWVKKQDLH* 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1046 1043 CDD AAA 200 251 - -
Vra2g1046 1043 SMART till_3 19 162 IPR000157 GO:0007165
Vra2g1046 1043 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 1033 IPR044974 GO:0006952
Vra2g1046 1043 Gene3D - 363 446 IPR042197 -
Vra2g1046 1043 PRINTS Disease resistance protein signature 223 238 - -
Vra2g1046 1043 PRINTS Disease resistance protein signature 299 313 - -
Vra2g1046 1043 PRINTS Disease resistance protein signature 397 411 - -
Vra2g1046 1043 PRINTS Disease resistance protein signature 634 650 - -
Vra2g1046 1043 Pfam TIR domain 20 191 IPR000157 GO:0007165
Vra2g1046 1043 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 15 1033 - -
Vra2g1046 1043 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 165 IPR035897 -
Vra2g1046 1043 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 456 IPR027417 -
Vra2g1046 1043 Gene3D - 17 190 IPR035897 -
Vra2g1046 1043 Gene3D Ribonuclease Inhibitor 551 742 IPR032675 -
Vra2g1046 1043 Gene3D Ribonuclease Inhibitor 757 926 IPR032675 -
Vra2g1046 1043 Pfam C-JID domain 916 1041 IPR045344 -
Vra2g1046 1043 ProSiteProfiles Leucine-rich repeat profile. 798 819 IPR001611 GO:0005515
Vra2g1046 1043 Gene3D - 192 355 IPR027417 -
Vra2g1046 1043 Pfam NB-ARC domain 221 432 IPR002182 GO:0043531
Vra2g1046 1043 SUPERFAMILY L domain-like 501 846 - -
Vra2g1046 1043 ProSiteProfiles TIR domain profile. 18 187 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1046 Vra-Chr2 11411553 11415758 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1046 20 841 WRKY Transcription Factor Family AT4G12020 29.647 2.54e-76 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1046 - - vra:106755397 1559.66