Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1039 ATGGCCTTAGATAACTTGGAGGAGATTGTGCCCCAAAACGAAAAGTGGAAATCTTCCAATGAAGTTATTGCAGATTCTGATATAAATGCCTCTAGTGGCTTTGACTGCAACATCTGCCTTGAGTGTGTGCAAGAACCAGTGGTCACACTCTGTGGTCATCTTTATTGCTGGCCATGCATATACAAATGGCTTCATTTTGAACGTACCTCTTTTGACAGTGAAGAGCAACAGAGTCCACGATGTCCAGTATGCAAATCAGAAGTTTCTCAATCTTCCCTTGTTCCATTATATGGCCGTGGCCTTACCACAAGACCTTCTAAGGGGAAAACACATCAAGTTGGGACTGTCATACCACAAAGACCACATGGTCCCAGATTATTGAATACCAGCAGTGTTTCCCAACCTATTTCTCAAAGTTATCATCATCCCTACAGTAATCCTTATTATACTCAGCAATTCAACTCAGTTCCAAACGGTTATACCTCACCGATGCTCAGAACAAGTGGTTCACTAGACAACACATTTGGAATCTTTGGGATCAGCAACCCAAGGATGAGCAGACATTTGATGCACGTTGATAAATCACTCAGCAGAATAAGTTGTTTCCTCCTATGCTGCCTAATTTTGTGTCTCCTTTTATTCTGA 645 0.4186 MALDNLEEIVPQNEKWKSSNEVIADSDINASSGFDCNICLECVQEPVVTLCGHLYCWPCIYKWLHFERTSFDSEEQQSPRCPVCKSEVSQSSLVPLYGRGLTTRPSKGKTHQVGTVIPQRPHGPRLLNTSSVSQPISQSYHHPYSNPYYTQQFNSVPNGYTSPMLRTSGSLDNTFGIFGISNPRMSRHLMHVDKSLSRISCFLLCCLILCLLLF* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1039 214 Pfam Zinc finger, C3HC4 type (RING finger) 36 84 IPR018957 GO:0046872
Vra2g1039 214 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 12 214 - -
Vra2g1039 214 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Vra2g1039 214 SUPERFAMILY RING/U-box 23 91 - -
Vra2g1039 214 ProSiteProfiles Zinc finger RING-type profile. 36 85 IPR001841 -
Vra2g1039 214 SMART ring_2 36 84 IPR001841 -
Vra2g1039 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 114 IPR013083 -
Vra2g1039 214 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 12 214 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vra2g1039 214 CDD RING-HC_AtRMA_like 34 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1039 Vra-Chr2 11240603 11243834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1039 21 214 C3H Transcription Factor Family AT4G28270 37.799 6.27e-40 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1039 K10666 - gmx:100807729 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1039 2 11240603 11243834 Vra2g1039 2 11240603 11243834 ECH