Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1033 ATGCAGCTCCACCGTGCCTCCACCGCGGCAAAAGGCCTTGCCTGCTTCATTTTCGCCTTGAAACTCGTGCTGTTGTACGCCGCCGAGGGACAGCCTCAGCACCGCGGTCCCGACCTACATTGGTACCCCGGAACCGCCACCTGGTACGGCGAACCCGAAGGAGACGGCAGCACCGGTGGGGCATGTGGGTATGGTTCGATGGTGGACGTGAAGCCGTTCAGGGCGCGAGTGGGAGCAGTGGGGCCCTTGCTGTTCATGAACGGCGAAGGGTGCGGTGCCTGCTACAAGGTGAGGTGTTTGGACAAGAGCATATGTTCGAGACGAGCTGTGACAGTCATAATTACCGACGAGTGTCCAGGTTGCCCCTCTGACCAAACACACTTCGATCTCAGTGGTGCCGCCTTTGGTCGCATGGCCATTGCTGGCGAGAACGGTCCTCTCAGAGACCGTGGTCAAATCCCTGTCATTTACCGAAGAACACCATGTAAATATCCCGGTAGAAAAATTGCTTTTCATGTCAACGAAGGCTCCACACCATTTTGGCTATCACTTCTGGTTGAGTTTGAGGACGCAGAAGGAGATATTGGCTCCATGCATATACGAGAATCAGGATCTACAGAATGGCTGCAGATGAATCACCTCTGGGGTGCAAATTGGTGCATTATTGGGGGACCTTTAAGAGGACCATTCTCAGTGAAATTGAGCTCTTCCAGTGGTAGAAGCCTTTCTGCAAGAGATGTTATTCCAGGAAGTTGGGTTCCAAAGGCGACTTACACTTCTCGGCTAAATTTCTACCCTTAG 801 0.5331 MQLHRASTAAKGLACFIFALKLVLLYAAEGQPQHRGPDLHWYPGTATWYGEPEGDGSTGGACGYGSMVDVKPFRARVGAVGPLLFMNGEGCGACYKVRCLDKSICSRRAVTVIITDECPGCPSDQTHFDLSGAAFGRMAIAGENGPLRDRGQIPVIYRRTPCKYPGRKIAFHVNEGSTPFWLSLLVEFEDAEGDIGSMHIRESGSTEWLQMNHLWGANWCIIGGPLRGPFSVKLSSSSGRSLSARDVIPGSWVPKATYTSRLNFYP* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1033 266 SMART dpbb_1 77 157 IPR007112 -
Vra2g1033 266 PANTHER EXPANSIN-LIKE PROTEIN B1 11 266 - -
Vra2g1033 266 SUPERFAMILY Barwin-like endoglucanases 40 166 IPR036908 -
Vra2g1033 266 Gene3D - 28 162 IPR036908 -
Vra2g1033 266 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576
Vra2g1033 266 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
Vra2g1033 266 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576
Vra2g1033 266 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Vra2g1033 266 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576
Vra2g1033 266 PRINTS Expansin/Lol pI family signature 246 260 IPR007118 GO:0005576
Vra2g1033 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 260 IPR007117 -
Vra2g1033 266 Gene3D - 163 261 IPR036749 -
Vra2g1033 266 PANTHER EXPANSIN-B3 11 266 - -
Vra2g1033 266 Pfam Expansin C-terminal domain 169 249 IPR007117 -
Vra2g1033 266 SUPERFAMILY PHL pollen allergen 167 260 IPR036749 -
Vra2g1033 266 Pfam Lytic transglycolase 82 156 IPR009009 -
Vra2g1033 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 167 IPR007112 -
Vra2g1033 266 PRINTS Major pollen allergen Lol pI signature 117 132 IPR005795 GO:0005576|GO:0019953
Vra2g1033 266 PRINTS Major pollen allergen Lol pI signature 139 154 IPR005795 GO:0005576|GO:0019953
Vra2g1033 266 PRINTS Major pollen allergen Lol pI signature 171 186 IPR005795 GO:0005576|GO:0019953
Vra2g1033 266 PRINTS Major pollen allergen Lol pI signature 187 202 IPR005795 GO:0005576|GO:0019953
Vra2g1033 266 PRINTS Major pollen allergen Lol pI signature 236 253 IPR005795 GO:0005576|GO:0019953
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1033 Vra-Chr2 11039076 11042304 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1033 13 202 Expansin Gene Family AT4G28250 71.053 4.26e-97 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1033 K20628 - gmx:100810778 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1033 2 11039076 11042304 Vra2g1033 2 11039076 11042304 ECH