LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra2g1026	ATGGCCGTGTCACTGTGCAGAAGTCGCACTGCTTCATCACTCAATTTGTTTGCCAATACTCTTCGCCGATTCTCTACTGGGGTGACAAACACCAGTGCTCAAAGAACGCCAGAGAGTATAGTGAATCAAATGATGTATTCTGACATAAACTCACGANTTGGGAGTTGCATGCCANTGTCTGCAATGCGAATTGGAACAATCATTCACAACATTGAATTGAACCCAGGGCAAGGTGGCAAGCTTGTCCGAGCTGCAGGAACTAGTGCAAAGATCTTGAAAGAGCCCACATCAGCATATTGTTTAATCCAGATGCCCTCTGGTGTTAAAAAGTTAATTGATTCTCGGTGTAGGGCCACCATTGGTGTTGTGTCTAATCCAAGCCATGGGGATCGCAAGCTTAGGAAGGCTGGACACAGACGATGGCTTGGTCGAAGACCTGTTGTTCGAGGAGTGGCTATGAATCCCGTAGATCATCCTCATGGGGGAGGAGAGGGTAAAAGCAAGAGTGGTGGAAAATGGGGAAGAGGATCTCTCACTCCTTGGGGCAAGCCAACCAAGGGTGGCTATAAGACTGGACCCCTGAAGCGCAGAAGGTAG	597	0.4824	MAVSLCRSRTASSLNLFANTLRRFSTGVTNTSAQRTPESIVNQMMYSDINSRXGSCMPXSAMRIGTIIHNIELNPGQGGKLVRAAGTSAKILKEPTSAYCLIQMPSGVKKLIDSRCRATIGVVSNPSHGDRKLRKAGHRRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSGGKWGRGSLTPWGKPTKGGYKTGPLKRRR*	199

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra2g1026	198	Gene3D	Ribosomal protein L2, domain 3	124	198	IPR014726	-
	Vra2g1026	198	PANTHER	39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL	42	198	-	-
	Vra2g1026	198	ProSitePatterns	Ribosomal protein L2 signature.	146	157	IPR022671	GO:0003735\|GO:0005840\|GO:0006412
	Vra2g1026	198	SUPERFAMILY	Translation proteins SH3-like domain	54	188	IPR008991	-
	Vra2g1026	198	Pfam	Ribosomal Proteins L2, C-terminal domain	53	182	IPR022669	GO:0003735\|GO:0005840\|GO:0006412
	Vra2g1026	198	MobiDBLite	consensus disorder prediction	152	198	-	-
	Vra2g1026	198	PANTHER	RIBOSOMAL PROTEIN L2	42	198	IPR002171	GO:0003735\|GO:0005840\|GO:0006412
	Vra2g1026	198	Gene3D	-	42	123	IPR014722	-
	Vra2g1026	198	SMART	Ribosomal_L2_C_2	51	184	IPR022669	GO:0003735\|GO:0005840\|GO:0006412

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra2g1026	Vra-Chr2	10999002	11002810	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra2g1026	43	163	Cytoplasmic Ribosomal Protein Gene Family	AT3G51190	41.085	7.96e-22	88.2

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra2g1026	-		-	gmx:100792418	311.997

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