LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra2g1021	ATGGCGAGTAACAGTGGAAAGTCCAGCAAAGAGGGTGTTGAAGAGACCCATCATCACCAAGTGTTTGGTGAAAGTGAAGGCCGGGATTCGGAGATAGAGAAGGGAAAGTGTGTGGATTTGAGCTCAGGGAGGAGACAGTGGAAGCCAGTTTTTGATGATGCTTCTATCTCACAAAGGCCTCTCAAGAAAATCCGCAGCCCCGAACACCAAAGCCCCAATCACCAACCTTCTTCATCACCTTCCTCTATGCTCTCTCTCCAACCTCCTTCATCCAGAATAGTGTTTCCTTTCGCTTTTGAAGGCTCTCAAACCCCAATGCCATCATTCCCAAACTCATTCGGAACCTCAAACTTGTCTCTTTTTCGTCCCCCTCTTCAGCCAACGCAACAAATGATATCGTTTGGGTCCCAACAGAACATGGGGTATCCACAATTCCTTTGCCCGGATTCCACCATACCAAACCAACAACAGCTCCAGCAGCAGCAGCAACAACAGCAGTATCAGCAGCAGCAGCAGCTTCTTCAGTATTGGAATGACGCACTCAATTTGAGTCCAAGAGGGAGGATGATGATGATGATGATGAACCGGTCAGGGCATGAAGGGAGACCAATGTTAAGGCCTCAAGCACAGCCTTTGAGTGCCACCAAGCTCTATAGGGGAGTGAGGCAACGCCATTGGGGCAAATGGGTCGCTGAAATTCGTCTCCCTCGCAATAGAACTCGCCTCTGGCTTGGAACCTTCGACACTGCTGAAGATGCTGCCATGGCTTATGATCGTGAAGCCTTTAAGCTTAGAGGAGAAAATGCTAAGCTCAATTTCCCTGAACTCTTCCTTAACAAAGATAAAGCAGAACCATCCACACCTGTTCCTGCTTCTTCCTCCAACGAAGGCTCAACATCAACATCAAGCCAGAACACTAAGCAACCTGAGCCAGTTCCAGAAGAGACCAACACTGAGAGCGAGGACATGCCACCAACTGAGACATTAGCAGAAGAGAATGCTGAAACTGAGGAAGGAGTTTCACAGCCTCAGGAACTGGTTTGGGGAGAGTGGTTCAATACAATTCCTGCAGGTTGGGGTCCTGGGAGTCCCGTGTGGGATGATTTGGATCACAACAACAATCTTCTTCTGCATTCACAACTTCCCTTTGTGAATCAATCTCATCAAGAGTTCCATCATGATGCCGCCGGTGCTTCTTCTCAGACACAACAAGATAACAACAACGCAGGACCAGGTTCTTCCTCTCCCTCTTGTCCCATGAGGCCCTTCTTCTGA	1275	0.4871	MASNSGKSSKEGVEETHHHQVFGESEGRDSEIEKGKCVDLSSGRRQWKPVFDDASISQRPLKKIRSPEHQSPNHQPSSSPSSMLSLQPPSSRIVFPFAFEGSQTPMPSFPNSFGTSNLSLFRPPLQPTQQMISFGSQQNMGYPQFLCPDSTIPNQQQLQQQQQQQQYQQQQQLLQYWNDALNLSPRGRMMMMMMNRSGHEGRPMLRPQAQPLSATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENAKLNFPELFLNKDKAEPSTPVPASSSNEGSTSTSSQNTKQPEPVPEETNTESEDMPPTETLAEENAETEEGVSQPQELVWGEWFNTIPAGWGPGSPVWDDLDHNNNLLLHSQLPFVNQSHQEFHHDAAGASSQTQQDNNNAGPGSSSPSCPMRPFF*	425

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra2g1021	424	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	1	424	-	-
	Vra2g1021	424	SMART	rav1_2	217	280	IPR001471	GO:0003700\|GO:0006355
	Vra2g1021	424	MobiDBLite	consensus disorder prediction	70	87	-	-
	Vra2g1021	424	MobiDBLite	consensus disorder prediction	390	424	-	-
	Vra2g1021	424	MobiDBLite	consensus disorder prediction	281	343	-	-
	Vra2g1021	424	MobiDBLite	consensus disorder prediction	315	334	-	-
	Vra2g1021	424	ProSiteProfiles	AP2/ERF domain profile.	217	274	IPR001471	GO:0003700\|GO:0006355
	Vra2g1021	424	MobiDBLite	consensus disorder prediction	1	87	-	-
	Vra2g1021	424	Pfam	AP2 domain	218	266	IPR001471	GO:0003700\|GO:0006355
	Vra2g1021	424	MobiDBLite	consensus disorder prediction	10	41	-	-
	Vra2g1021	424	CDD	AP2	216	276	IPR001471	GO:0003700\|GO:0006355
	Vra2g1021	424	PRINTS	Ethylene responsive element binding protein signature	218	229	IPR001471	GO:0003700\|GO:0006355
	Vra2g1021	424	PRINTS	Ethylene responsive element binding protein signature	240	256	IPR001471	GO:0003700\|GO:0006355
	Vra2g1021	424	Gene3D	AP2/ERF domain	217	275	IPR036955	GO:0003700\|GO:0006355
	Vra2g1021	424	SUPERFAMILY	DNA-binding domain	217	275	IPR016177	GO:0003677
	Vra2g1021	424	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053	1	424	-	-
	Vra2g1021	424	MobiDBLite	consensus disorder prediction	286	313	-	-
	Vra2g1021	424	MobiDBLite	consensus disorder prediction	390	415	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra2g1021	Vra-Chr2	10929547	10932289	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra2g1021	32	370	AP2-EREBP Transcription Factor Family	AT4G28140	43.529	7.18e-65	208

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Vra2g1021		AP2	2.8e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra2g1021	-		-	var:108339749	724.931