Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1020 ATGGAAAATTATAATGAAATCTATTCAACCCGTGTTACTTCATTCACTTCTGGTGCATCTTTCCGGCCTTATCTTGTTACTCTGAAAAGAAAGGTTGCTGCTGAGTTCATTGGAACCTTTATTATCATATTCACTACCACTGCTACAGCCATTTTCAACCACAACTCTAAGACCCTTAAGACCCTTAATTGTGTTACAACCGCAGGTCTTACTGTTATGGTTTTCATATTTGCCACAGGACATATATCGATGGTTACTTTTTCGTTTGTTGTGTTGAAGCACTTCCCATGGAAACATGTGCCTATTTATATTGGTGCACAAGTTTTGACATCAGTTTGTGCCGCATTTGCTCTAAAAGGGGTTTATCATCCTTTCATGAATGGTGGAGTTACAGTTCCTTTAGGTGGATATGGTCAATCTTTCGCTTTAGAATTCATTATTACATTCAATCTAATGTTTGATGTCACTACAGTAGCCACCGACACCAAAAGCGTGCGAAAACTTGCAGGAATTGCGCTAGGAGACACTGTGATGCTCAATATACTTATAACAGGGCCAGTATCAGTATCAGGGGGCTCAATGAACCTAGTGAGAACACTAGGTCTTGCCATCGCCACAAATAATTATAAAGATATATGGATTTATATGATAGCTCCCGTACTCGGAGCTTTAGCCAGTGCATGTACCTATACTGCAGTGAAACTGCCCAAAGAATGTGAAAGCAAAAGCTTCAATTAG 738 0.3957 MENYNEIYSTRVTSFTSGASFRPYLVTLKRKVAAEFIGTFIIIFTTTATAIFNHNSKTLKTLNCVTTAGLTVMVFIFATGHISMVTFSFVVLKHFPWKHVPIYIGAQVLTSVCAAFALKGVYHPFMNGGVTVPLGGYGQSFALEFIITFNLMFDVTTVATDTKSVRKLAGIALGDTVMLNILITGPVSVSGGSMNLVRTLGLAIATNNYKDIWIYMIAPVLGALASACTYTAVKLPKECESKSFN* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1020 245 Pfam Major intrinsic protein 27 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g1020 245 Gene3D Glycerol uptake facilitator protein. 10 243 IPR023271 -
Vra2g1020 245 SUPERFAMILY Aquaporin-like 24 236 IPR023271 -
Vra2g1020 245 PRINTS Major intrinsic protein family signature 30 49 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g1020 245 PRINTS Major intrinsic protein family signature 99 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g1020 245 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g1020 245 PRINTS Major intrinsic protein family signature 176 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g1020 245 PRINTS Major intrinsic protein family signature 213 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g1020 245 PANTHER AQUAPORIN NIP2-1 21 241 IPR034294 -
Vra2g1020 245 PANTHER BNAA02G36290D PROTEIN 21 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1020 Vra-Chr2 10914116 10915748 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1020 20 241 Major Intrinsic Protein MIP AT1G80760 61.572 2.46e-91 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1020 K09874 - gmx:100815637 280.026