Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1019 ATGCGTGCGCACGTGTACGTGCGTGCATGCGTGCGAAAAAAAAAGGTTGTTGTTGAGTTCATTGCAACTTTTATTATCATATTCGCTGCCACTGCTGCAACCATTTTAAACCACAACTCTGAGACCCTTAAAACCCGTAATTGTGCTACAACCGCAGGTCTTACTGTTATGGTTGTCATATTTGCCACTGGACATATATCAGAAGCCCATATAAACCCTGCTGTTACTTTTTCGTTTGCTGTGGTGAAGCACTTCCCATGGAAACATGTGTCTATTTATATTGGTGCACAAGTTTTGGCATCGGTTTGTGCCGTATTTTCTCTGAAAGGGGTTTATCATCCTTTCATGAATGGTGGAGTTACAGTTCCTTCAGGTGGATATCGTCAATCTTTTGCTTTGGAATTCATTATTACAATCAATTTAATGTTTATTGTCACTGCAATAGCCACCGACACCAGAAGCGTGGGAAAACTTGTAGGAATTGCGGTGGGAGGCACTATGATGCTCAATATACTCACAGTAGGGTATATCACTGGCTCAATGAACCTAGTGAGAACACTAGGTCCAGCCATCGCCACAAATAATTATAAAGATATATGGATTTATATGATATATCCTGTAATCCAAACTTTAGCCGGTGCATGTATCTATACTGCAGTGAAACTGCCCAAAGAATGTGAAAACAAAGTCTTCAATTAG 699 0.4049 MRAHVYVRACVRKKKVVVEFIATFIIIFAATAATILNHNSETLKTRNCATTAGLTVMVVIFATGHISEAHINPAVTFSFAVVKHFPWKHVSIYIGAQVLASVCAVFSLKGVYHPFMNGGVTVPSGGYRQSFALEFIITINLMFIVTAIATDTRSVGKLVGIAVGGTMMLNILTVGYITGSMNLVRTLGPAIATNNYKDIWIYMIYPVIQTLAGACIYTAVKLPKECENKVFN* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1019 232 PRINTS Major intrinsic protein family signature 14 33 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g1019 232 PRINTS Major intrinsic protein family signature 52 76 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g1019 232 PRINTS Major intrinsic protein family signature 89 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g1019 232 PRINTS Major intrinsic protein family signature 133 151 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g1019 232 PRINTS Major intrinsic protein family signature 200 220 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g1019 232 ProSitePatterns MIP family signature. 70 78 IPR022357 -
Vra2g1019 232 PANTHER AQUAPORIN NIP2-1 24 228 IPR034294 -
Vra2g1019 232 SUPERFAMILY Aquaporin-like 14 224 IPR023271 -
Vra2g1019 232 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 24 228 - -
Vra2g1019 232 Pfam Major intrinsic protein 13 217 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g1019 232 Gene3D Glycerol uptake facilitator protein. 6 229 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1019 Vra-Chr2 10905608 10907292 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1019 14 227 Major Intrinsic Protein MIP AT1G80760 61.574 7.92e-92 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1019 K09874 - gmx:100815637 284.263