Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1018 CTCACTTCTGGTGCATCTCTCCGGCCTTCTCTTGTTACTTTAGAAAGAAAGGTTGTTATTGAGTTCATTGGAACCTTTGTTATCATATTCGCAGCCATTGCTACAGCCATTTTCAACCACAATTCTGAGACCCTTAAGACCCTTAATTGTGCTACAACCGCATATCTTACTATTATGGTTGTCATATTTGCCACCAGACATATATCGGGAGCCCATATAAACCCAACTGTTACTTTTTCGTTTGCTGTGTTGAAGCACTTCCCATGGAAACATGTGCCTATTTATATTGGTGCACAAGTTTTGGCATCGGTTTGTGCCGCATTTGTTCTGAAAGAGGTTTATCATCCTTTCATGAATGGTGTTACAGTTCCTTCAGGTGGATATGGTCAATCTTTAGAATTCATTATTACATTCAATCTAATGTTTGTTGTCACTGCAGTAGCCACTGACACTAGAAATGTGGAAAAACTTGCAGGAATTGCGGTGGGAGGCACTGTGATGCTCAATATACTTATAGCCAGGTATATTTTATTATCAGGAGACTCAATGAATCCAGTGAGAACACTAGGTCTTGCCATCGCCACAAATAATTATGAAGATATATGGATTTATATGATAGCTCCCATACTCGGAGCTTTAGCCGGTACATGTACCTATACTGTAGTGAAACTGTCCAAAGAATGTGAAAACAAAGGCTTCAATTAG 705 0.3943 LTSGASLRPSLVTLERKVVIEFIGTFVIIFAAIATAIFNHNSETLKTLNCATTAYLTIMVVIFATRHISGAHINPTVTFSFAVLKHFPWKHVPIYIGAQVLASVCAAFVLKEVYHPFMNGVTVPSGGYGQSLEFIITFNLMFVVTAVATDTRNVEKLAGIAVGGTVMLNILIARYILLSGDSMNPVRTLGLAIATNNYEDIWIYMIAPILGALAGTCTYTVVKLSKECENKGFN* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1018 234 PANTHER BNAA02G36290D PROTEIN 6 230 - -
Vra2g1018 234 SUPERFAMILY Aquaporin-like 12 224 IPR023271 -
Vra2g1018 234 Pfam Major intrinsic protein 12 219 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g1018 234 Gene3D Glycerol uptake facilitator protein. 6 232 IPR023271 -
Vra2g1018 234 PANTHER AQUAPORIN NIP2-1 6 230 IPR034294 -
Vra2g1018 234 ProSitePatterns MIP family signature. 72 80 IPR022357 -
Vra2g1018 234 PRINTS Major intrinsic protein family signature 16 35 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g1018 234 PRINTS Major intrinsic protein family signature 54 78 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g1018 234 PRINTS Major intrinsic protein family signature 91 110 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g1018 234 PRINTS Major intrinsic protein family signature 132 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g1018 234 PRINTS Major intrinsic protein family signature 165 187 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra2g1018 234 PRINTS Major intrinsic protein family signature 202 222 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1018 Vra-Chr2 10900425 10901888 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1018 6 229 Major Intrinsic Protein MIP AT1G80760 64.035 4.54e-93 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1018 K09874 - gmx:100815637 275.404