Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1009 ATGGATTGGAAGAGATCTGCTTCGGAGTGCCAGAGAGTAAAGATCTGTGGACAAGTTCTGTTGGGAATTTTGTTGATCTGCATAATTCACACTTCTTGTGCCATCACCGATCCCACTGATGTTGCTGCAATTAATAGCTTATATGTTTCACTGGGATCCCCTGTTCTTCCTGGGTGGGTTGCTAGTGGAGGAGATCCATGTGGAGAAGGGTGGCAAGGCATTCTGTGTAATGGGTCATTCATACAAAAAATAGTTCTAAATGGTGCAAATTTGGGAGGAGAACTGGGAGATAAACTGTCAACTTTTGTTTCAATCTCAGTAATTGATCTAAGCAACAACAACATTGGAGGAAATATTCCATCTAGTTTGCCAGTTACCATGAAAAACTTTTTTCTTTCAGCCAATCAGTTTACTGGAAGTATTCCAACCACTTTATCCACTCTGGCTGGACTGACAGACATGTCTCTTAACAACAATTTCTTAACTGGCGAATTACCGGATGCTTTTCAGTCACTTACGCAATTGATCAATCTTGATTTATCGCATAATAATTTGAGTGGAGCATTGCCTTCTTCTATGGATAACTTGTCATCTCTGACCACCCTACGCTTACAAAACAACCAATTGTCTGGGACACTTGATGTCTTACAAGACCTTCCTCTGAAAGATTTGAATATTGAGAACAACCAGTTTGCTGGCCCAATACCACCAAAGTTGCTGAGCATCCCAGCCTTCAGGCAAGCTGGAAACCCATTTAATGTTAATGGTACAACACCTCCAGCTTCTTCACCTCGCTCCCCAGCAATAGCACCACCAGGAACTCCCATTTCTGGGGCACCACCGGGAACTCCCACCTCTGGGTCACCACCATCTTCTGGCCGCGTACCTACTAAACAGGCCGATGGACCAGCTGCAGCAAATGAATCGCACACTGGGAAATCCAAAAATTCCACAAAAAAGGTGGTTTGGATATCTATTGGTAGTGTGTTAGGATTCATTATTTTGTTACTAGGATTCGTTCTCTTTATTCCAAGATGCAGCAGAAGAGAACGGGATGGCAGAAGGTCCAAACATCAAATTGGTGCGTATGGGGCTGAAAGGGAAATGACCAGGGATAACGGGAGTTCAGTCCAACCACCTAGTCAAATGGAAAAAGTACCAGTAGGGGATGTTCCAAGGCCAAAAGAGGACCATCAGGCAGAGAATAGGATAGCCTGGGCTAATCCAAGGCAAAACGAAGGTCGTCAGGCAGAGATCAGGACAGTCTCGGCTATTCCAAATCCACATCCAAATCCACGGAGTAAGCAAGAGAATGATGTGCAAAGAATGGCAACAATACCAAAGCCAAGAGATCATGAGATAGATATTAGTACACTAGAAGTATATTCAATGCCTCCTCCCCCNCCNCCCCCNCCCCCCCCCCCCCCCCCCCCTCCTACTACTGAGAAGGTGACTGTTGAGCCAGCCACATCCCGCAGAGCAACTAACGTCACTACGCACAAAAAGAGTGCAGTTCCTCCGACTTTTGCGAAGTTTTTTGGTATTGCATCCCTTCAACAGTATACAAATAGCTTTTCTCAAGAAAATCTTATAGGAGGAGGCATGCTTGGTAATGTGTATAGAGCCGAGCTTCCTAATGGCAAGTTTCTTGCTGTAAAGAAACTGGATAAGAGAGCTTCGGAAAACCAGAAGGATGATGAATTTCTTGAATTGATCAATAGTATTGACAGAATAAGGCATGCAAATGTTGTTGAGCTTGTCGGATACTGTTCCGAGCATGGTCAGAGGCTTCTTATATATGAGTACTGCAGTAATGGGTCACTGTATGATGCACTCCACTCAGACGATGACTTCAAAACCACACTCTCATGGAATACTAGAATTCGAATAGCTCTTGGGGCAGCCAGAGCCTTAGAATATCTGCATGAGCTATGTCAGCCTCCTGTAGTACATAGAAATTTGAAGTCTGCCAATATTCTGCTTGATGATGATCTATCCGTGCGGGTCTCTGATTGTGGTTTAGCTCCATTAATAGCTTCAGGATCAGTCAGTCAGCTCTCGGGGAACCTGTTAACTGCTTATGGATATGGAGCTCCTGAATTTGAGTCTGGAATATACACATACCAAAGTGATGTGTACAGCTTTGGAGTGATCATGTTAGAACTTTTGACTGGCCGTCAGTCCCACGACAGGACACGTCCCCGGGGTGAGCAGTTTCTGGCCAGATGGGCAGTTCCCCAACTTCATGATATTGAAGCCTTAACGAACATGGTTGACCCTGCTTTGAATGGAAATTACCCAGCAAAATCATTGTCAAATTTTGCAGACATTATCTCTAGATGCCTTCAGTCCGAGCCTGAATTTAGGCCAGCAATGTCCGAGGTTGTCTTATACTTACTAAATATGATAAAGAAGGAGTCTCAGCTAGGTGAATCAAATGAAAAATGA 2448 0.4424 MDWKRSASECQRVKICGQVLLGILLICIIHTSCAITDPTDVAAINSLYVSLGSPVLPGWVASGGDPCGEGWQGILCNGSFIQKIVLNGANLGGELGDKLSTFVSISVIDLSNNNIGGNIPSSLPVTMKNFFLSANQFTGSIPTTLSTLAGLTDMSLNNNFLTGELPDAFQSLTQLINLDLSHNNLSGALPSSMDNLSSLTTLRLQNNQLSGTLDVLQDLPLKDLNIENNQFAGPIPPKLLSIPAFRQAGNPFNVNGTTPPASSPRSPAIAPPGTPISGAPPGTPTSGSPPSSGRVPTKQADGPAAANESHTGKSKNSTKKVVWISIGSVLGFIILLLGFVLFIPRCSRRERDGRRSKHQIGAYGAEREMTRDNGSSVQPPSQMEKVPVGDVPRPKEDHQAENRIAWANPRQNEGRQAEIRTVSAIPNPHPNPRSKQENDVQRMATIPKPRDHEIDISTLEVYSMPPPPPPPPPPPPPPPTTEKVTVEPATSRRATNVTTHKKSAVPPTFAKFFGIASLQQYTNSFSQENLIGGGMLGNVYRAELPNGKFLAVKKLDKRASENQKDDEFLELINSIDRIRHANVVELVGYCSEHGQRLLIYEYCSNGSLYDALHSDDDFKTTLSWNTRIRIALGAARALEYLHELCQPPVVHRNLKSANILLDDDLSVRVSDCGLAPLIASGSVSQLSGNLLTAYGYGAPEFESGIYTYQSDVYSFGVIMLELLTGRQSHDRTRPRGEQFLARWAVPQLHDIEALTNMVDPALNGNYPAKSLSNFADIISRCLQSEPEFRPAMSEVVLYLLNMIKKESQLGESNEK* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1009 815 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 25 814 - -
Vra2g1009 815 Gene3D Phosphorylase Kinase; domain 1 484 602 - -
Vra2g1009 815 MobiDBLite consensus disorder prediction 264 287 - -
Vra2g1009 815 MobiDBLite consensus disorder prediction 462 483 - -
Vra2g1009 815 SUPERFAMILY Protein kinase-like (PK-like) 503 799 IPR011009 -
Vra2g1009 815 SUPERFAMILY L domain-like 41 242 - -
Vra2g1009 815 ProSiteProfiles Protein kinase domain profile. 525 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1009 815 MobiDBLite consensus disorder prediction 389 403 - -
Vra2g1009 815 Pfam Protein tyrosine and serine/threonine kinase 528 797 IPR001245 GO:0004672|GO:0006468
Vra2g1009 815 MobiDBLite consensus disorder prediction 368 441 - -
Vra2g1009 815 MobiDBLite consensus disorder prediction 251 318 - -
Vra2g1009 815 SUPERFAMILY Formin homology 2 domain (FH2 domain) 468 477 - -
Vra2g1009 815 MobiDBLite consensus disorder prediction 427 441 - -
Vra2g1009 815 Gene3D Ribonuclease Inhibitor 38 258 IPR032675 -
Vra2g1009 815 ProSiteProfiles Leucine-rich repeat profile. 198 220 IPR001611 GO:0005515
Vra2g1009 815 MobiDBLite consensus disorder prediction 460 503 - -
Vra2g1009 815 Pfam Leucine rich repeat 128 185 IPR001611 GO:0005515
Vra2g1009 815 Gene3D Transferase(Phosphotransferase) domain 1 603 815 - -
Vra2g1009 815 PANTHER OS01G0253100 PROTEIN 25 814 IPR045271 GO:0004714|GO:0006468
Vra2g1009 815 MobiDBLite consensus disorder prediction 484 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1009 Vra-Chr2 10610620 10617746 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1009 26 806 Strubbelig Receptor Gene Family AT4G03390 60.427 0.0 869
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vra2g1009 PK_Tyr_Ser-Thr 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1009 - - mtr:MTR_4g046113 1110.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1009 2 10610620 10617746 Vra2g1009 2 10610620 10617746 ECH
Vra2g1009 2 10610620 10617746 Vra2g1009 2 10610620 10617746 PCT