Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0996 ATGACGGTTTCTTCCTTCTTCAACAGGGCCTCCAGGGTTCTAAGCTCCTCCAATTTTCTTTTGCTCTGCACTCTCAGTGGTGGTGGTGTGGTTGCATACTCGGAATCACAAACAGGAGCTGAACGTCCTAGTCTTCAAGCTAATGAGCCCTCCAAAAAGAAAGTAGTGGTTCTTGGAACAGGATGGGCTGCTACCAGTTTCCTTAAGGATCTGGATGCATCATTATATGATGTTCAGGTTGTTTCGCCTCGTAATTACTTTGCATTTACTCCCTTATTACCTAGTGTCACTTGTGGGACAGTTGAAGCACGGAGCATTGTAGAGCCAGTCCGAAACATCATTAAAAAGAGAAAAGGAGAAATAAACTTCTGGGAAGCAGAATGTATCAAGATTGATTCTTCAAACAAAAAGGTTTTCTGTCGGTCCAATATTGACAACTTGGTGGGAAGTGGCGAATTTTCCTTGGACTATGATTTCTTGGTTGTAGCAGTGGGAGCACAAGTAAATACATTTAACACTCCTGGTGTCAAGGAGAACTGTCATTTTCTGAAGGATGTTGAGGATGCTCAGAGGATTAGACTGTCTGTGATTGATTGCTTTGAGAAGGCTGTTCTTCCTAGTATAACTGACCAAGAGCAAAGGTCAATTCTTCATTTTGTTGTAGTGGGAGGAGGTCCAACTGGTGTGGAATTTGCTGCAGAATTGCATGATTATGTCCTAGAAGATTTAATCAAATTATATCCAACCGTCAAAGATAAAGTGAAAATAACAGTGATTCAATCAGGAGATCACATCTTGAACATGTTTGATGAAAGAATAAGTTCATTTGCTGAGCAAAAATTTACAAGAGATGGGATAGAAGTTCAAACAGGATGCCGGGTCATCGGTGTTGACGACAAGGTTATTACAATGAAGGAAAAATCAACTGGAGAGGTTTGCTCAGTGCCCCATGGATTGGTTGTGTGGTCAACTGGCATTTCAACTCTTCCAGTTATAAGGGACTTTATGAAAGAAATTGGTCAGGATGATATCACAGCCGTATTTGAGGCTGCAGACAAAGATAAGTCAGGCACCTTAACTATTGAAGAATTCCAGGAGGTGATGGATGACATTGTCTTAAGATATCCGCAAGTTGAGCACTATCTAAAGCAAAAACATCTGCGTGATTTTAGCACACTATGGAAAGATTTGCAAGGGAATGAAAGCAAGGAAATAGGCATAGAAGCATTTAAGCTGGCCCTTTGTCATGCAGATTCACAGGTGAAGAGTCTGCCAGCAACTGCACAGGTTGCTGCCCAACAGGGTGCATATCTAGCTAGATGCTTCAACCACATGGATCATGCTGAAGAGCATCCTGAAGGTCCTCGACGATTTAGTGGATCTGGACGCCATAAGTTTCTACCCTTCCGGTATAGGCATCTGGGTCAATTTGCTCCACTGGGTGGGGAACAGACAGCTGCAGAACTTCCTGGAGACTGGGTTTCCATGGGTCACAGCACTCAATGGCTTTGGTATTCTGTATATGCAAGCAAGCAAGTGAGCTGGCGAACAAGGGTCTTGGTCGTGTCTGATTGGACAAGAAGATTCATATTTGGCAGGGATTCAAGTCGAGTTTAA 1617 0.4292 MTVSSFFNRASRVLSSSNFLLLCTLSGGGVVAYSESQTGAERPSLQANEPSKKKVVVLGTGWAATSFLKDLDASLYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIIKKRKGEINFWEAECIKIDSSNKKVFCRSNIDNLVGSGEFSLDYDFLVVAVGAQVNTFNTPGVKENCHFLKDVEDAQRIRLSVIDCFEKAVLPSITDQEQRSILHFVVVGGGPTGVEFAAELHDYVLEDLIKLYPTVKDKVKITVIQSGDHILNMFDERISSFAEQKFTRDGIEVQTGCRVIGVDDKVITMKEKSTGEVCSVPHGLVVWSTGISTLPVIRDFMKEIGQDDITAVFEAADKDKSGTLTIEEFQEVMDDIVLRYPQVEHYLKQKHLRDFSTLWKDLQGNESKEIGIEAFKLALCHADSQVKSLPATAQVAAQQGAYLARCFNHMDHAEEHPEGPRRFSGSGRHKFLPFRYRHLGQFAPLGGEQTAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRVLVVSDWTRRFIFGRDSSRV* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0996 538 ProSitePatterns EF-hand calcium-binding domain. 352 364 IPR018247 -
Vra2g0996 538 SUPERFAMILY FAD/NAD(P)-binding domain 52 270 IPR036188 -
Vra2g0996 538 SUPERFAMILY FAD/NAD(P)-binding domain 218 440 IPR036188 -
Vra2g0996 538 PANTHER EXTERNAL ALTERNATIVE NAD(P)H-UBIQUINONE OXIDOREDUCTASE B2, MITOCHONDRIAL-RELATED 7 343 - -
Vra2g0996 538 PANTHER EXTERNAL ALTERNATIVE NAD(P)H-UBIQUINONE OXIDOREDUCTASE B2, MITOCHONDRIAL-RELATED 342 538 - -
Vra2g0996 538 Gene3D - 43 371 - -
Vra2g0996 538 Gene3D - 405 538 - -
Vra2g0996 538 ProSiteProfiles EF-hand calcium-binding domain profile. 339 374 IPR002048 GO:0005509
Vra2g0996 538 PRINTS FAD-dependent pyridine nucleotide reductase signature 23 42 - -
Vra2g0996 538 PRINTS FAD-dependent pyridine nucleotide reductase signature 157 175 - -
Vra2g0996 538 PRINTS FAD-dependent pyridine nucleotide reductase signature 218 236 - -
Vra2g0996 538 PANTHER NADH DEHYDROGENASE 7 343 IPR045024 GO:0003954|GO:0006116
Vra2g0996 538 PANTHER NADH DEHYDROGENASE 342 538 IPR045024 GO:0003954|GO:0006116
Vra2g0996 538 SMART efh_1 343 371 IPR002048 GO:0005509
Vra2g0996 538 Pfam Pyridine nucleotide-disulphide oxidoreductase 53 333 IPR023753 GO:0016491
Vra2g0996 538 SUPERFAMILY EF-hand 332 416 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0996 Vra-Chr2 10455058 10462037 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0996 5 538 Chloroplast and Mitochondria Gene Families AT4G21490 60.309 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0996 K03885 - gmx:100793566 988.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0996 2 10455058 10462037 Vra2g0996 2 10455058 10462037 ECH