Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0989 ATGGGAAGAGCTCCTTGCTGTGACAAGAATGGACTCAAGAAGGGTCCATGGACACCAGAAGAAGACCTTAAGCTCATCAACTACATTCAGACTCATGGACCAGGCAATTGGAGATCCCTACCTAAAAGTGCTGGTCTACAAAGGTGTGGCAAGAGTTGCCGCCTTCGATGGACAAATTACCTTAGACCTGATATTAAGAGAGGAAGATTCTCCTTAGAAGAAGAAGATACGATTATTCAGTTGCACAGTATCATGGGAAACAAATGGTCATCTATAGCAGCTAGGTTGCCAGGAAGAACTGACAATGAAATAAAGAACTATTGGAACACACACATTAGGAAGAGGCTTCTTCGTATGGGAATTGATCCAGTTACACACGCCCCACGCCTTGACCTGCTTGACATGTCCTCTATTTTAAGGTCAGTGTTGAATCCCTCCCTTAGCATGCAAGGCTTCTTAGGAGGAGCTCAAGTTTTGATGAACCAAGGGTTGTTAAACCTTGCTGCTACAGCCTCTCTTCTAGAGAATCAAAATTTGGCTTCACACAATTATGTACAAAACCAAGTTGCTCAACCACTAGACATAACTCAGCTTCAAAGTGTGGAAGGATTCTCTGGCACCATGGAAAACTTTAGCTGCTCAAATTCTCCTTCGGGTGATGAGAACCTTGTTTTGCAACAAAACCAAGTTGATTTGTTAGGTAACCATGTTTTTGCGCATTCCCTGAAAAATGCAGAGCTGAAAAAGGGGTATGACTCGGCTATGCCTACGCCTGAGTCAAGTCCAAACCAGTTGAATTCATCATCAAACTATTTGAGAAGTTGCACGGAGGAAGAGAAGAATAGTTTTTGCAGTGACTTGTTCGAATTCGATATTCCAGAGGGTTTAGACATTGCTGATATTTTTTGTACTGTCCCAGAGTGTTAA 927 0.4261 MGRAPCCDKNGLKKGPWTPEEDLKLINYIQTHGPGNWRSLPKSAGLQRCGKSCRLRWTNYLRPDIKRGRFSLEEEDTIIQLHSIMGNKWSSIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAPRLDLLDMSSILRSVLNPSLSMQGFLGGAQVLMNQGLLNLAATASLLENQNLASHNYVQNQVAQPLDITQLQSVEGFSGTMENFSCSNSPSGDENLVLQQNQVDLLGNHVFAHSLKNAELKKGYDSAMPTPESSPNQLNSSSNYLRSCTEEEKNSFCSDLFEFDIPEGLDIADIFCTVPEC* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0989 308 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra2g0989 308 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vra2g0989 308 CDD SANT 69 112 IPR001005 -
Vra2g0989 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vra2g0989 308 CDD SANT 16 61 IPR001005 -
Vra2g0989 308 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra2g0989 308 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vra2g0989 308 Gene3D - 13 66 - -
Vra2g0989 308 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 297 - -
Vra2g0989 308 PANTHER TRANSCRIPTION FACTOR MYB41 1 297 - -
Vra2g0989 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vra2g0989 308 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra2g0989 308 SMART sant 66 114 IPR001005 -
Vra2g0989 308 SMART sant 13 63 IPR001005 -
Vra2g0989 308 Gene3D - 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0989 Vra-Chr2 10362065 10363656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0989 1 298 MYB Transcription Factor Family AT4G21440 47.839 3.51e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra2g0989 Myb_DNA-binding 2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0989 K09422 - gmx:100817731 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0989 2 10362065 10363656 Vra2g0989 2 10362065 10363656 ECH
Vra2g0989 2 10362065 10363656 Vra2g0989 2 10362065 10363656 PCT