Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0981 ATGGTAAGAACCCCATCTTGTGACAAAAGTGGACTGAGAAAGGGTACTTGGACTCCTGAGGAAGATAGAAAATTAATTGCTTATGTTACAAGATATGGTTCCTGGAATTGGCGCCAACTTCCCAGGTTTGCAGGTCTGGAAAGATGTGGGAAAAGTTGTAGATTGAGATGGATGAATTATCTCAGGCCTAACGTCAAAAGAGGCAACTTCACTCCACAAGAAGAAGATTGCATCATAAGAATGCACAAAAAACTTGGTAACAGGTGGTCGGCTATTGCGGCTGAGTTACCAGGAAGAACAGATAACGAAATAAAAAACCATTGGCACACTACTCTGAAGAAAAGGTCTGAACAAAATACAGTAACAAATGAAGAAGCTAGAGCCTTCAAATCAAAGAATAAAGAATCCAACCCCAATGGTTTTACTGTTACTCTTCCATCCAATTCCGGGACTTCTGATAATGCATCAGCCTCAGTCTCACCACTCTCATCCTCCAGCAGCGTGTTTTCCTCCACAGCTTCAGATGATTGCAGTGGTGCCAGCATGAAAAGTTTGGTTTTTGAAGATGATGACTTTGGCTTTCTGGATTCGTACATGGAGCCGATGAATGATAGTTTCTGGAGCGAGCTAAATCTGGATGACATCTCCTACAGTGCAGCATGTGAAATAGTTTCAGGAGATAGCAATGGCGCAATTCAAAGCAGTGATACTAGCGTTAATGATTGTTGTGCAATGTCTCCGCATGGATCAAGCAGCGAAAGTATTGTTATCGATAATGGCTCTGGCAGTTTTCTGGATGCATATGCAGAGGCAACAGTTGAGAACCTTTGGATGCAGCCATATGTGGCTGACATGTCCCACGTTCCAAGCGAACTTCTTGTCCCTTCCGTTGTAGAATCTGAATATTTTACTCCAATCTACTATGATCTCTGGGGATAA 939 0.426 MVRTPSCDKSGLRKGTWTPEEDRKLIAYVTRYGSWNWRQLPRFAGLERCGKSCRLRWMNYLRPNVKRGNFTPQEEDCIIRMHKKLGNRWSAIAAELPGRTDNEIKNHWHTTLKKRSEQNTVTNEEARAFKSKNKESNPNGFTVTLPSNSGTSDNASASVSPLSSSSSVFSSTASDDCSGASMKSLVFEDDDFGFLDSYMEPMNDSFWSELNLDDISYSAACEIVSGDSNGAIQSSDTSVNDCCAMSPHGSSSESIVIDNGSGSFLDAYAEATVENLWMQPYVADMSHVPSELLVPSVVESEYFTPIYYDLWG* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0981 312 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vra2g0981 312 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra2g0981 312 MobiDBLite consensus disorder prediction 115 167 - -
Vra2g0981 312 CDD SANT 69 112 IPR001005 -
Vra2g0981 312 MobiDBLite consensus disorder prediction 133 167 - -
Vra2g0981 312 CDD SANT 16 61 IPR001005 -
Vra2g0981 312 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra2g0981 312 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 247 - -
Vra2g0981 312 SMART sant 13 63 IPR001005 -
Vra2g0981 312 SMART sant 66 114 IPR001005 -
Vra2g0981 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vra2g0981 312 Gene3D - 6 66 - -
Vra2g0981 312 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vra2g0981 312 MobiDBLite consensus disorder prediction 115 132 - -
Vra2g0981 312 Gene3D - 69 115 - -
Vra2g0981 312 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 247 - -
Vra2g0981 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vra2g0981 312 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0981 Vra-Chr2 10192146 10193374 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0981 1 210 MYB Transcription Factor Family AT2G31180 48.095 1.03e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra2g0981 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0981 K09422 - gmx:778184 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0982 2 10203775 10204692 Vra2g0981 2 10192146 10193374 PCT
Vra2g0981 2 10192146 10193374 Vra2g0983 2 10259897 10261482 PCT