Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0980 ATGGTGAGAACTCCGTCTTGTGACAAAAGTGGACTAAGAAAGGGAACTTGGACTCCCGAAGAAGATAGGAAGTTGGTTGCATATGTCACTAGGTATGGCTGCTGGAATTGGCGCCAACTTCCCAAGTTTGCAGGTCTTGCAAGGTGTGGGAAAAGTTGCAGATTGAGATGGATGAACTATTTAAGGCCTAATCTCAAAAGAGGGAACTTCACTCCACAAGAAGAAGAATGCATCATCAGAATGCTCAAAAATCTTGGTAACAGATGGTCGGCTATTGCGGCTGAGTTACCAGGAAGAACAGATAACGAAATAAAAAACCATTGGCACACCACTCTGAAGAAAAAGTATCAACAAAATACAGTTACAAATGAAGATGCCAGAGCCTCCAAATCAAAGAAAAAAGACTCAGTTCCCAACAAAAATGGTGTTACTGTTAGACTTCCAGCCACTTCCCAGATTTCAGATAATTCATCATTCTCGCCGGTTTCATCCTCCAGCAGCGAGTTTTCCTCCCTAAGTTCAGATCTTTCCAGTTGTACTAGCATGGAAAATTTGTTGTTTGAAGATGACTTGGGTTTTCTTGATTCGTATGTGAATGAAAGTTTCTGGAAAGAACTGAATCTTGATGGTGTACCTTGTGAATCAAGAGATACTACTTCAACAGAGATGGTTGATTCTTGTGCATCGAGTGAAAGTGTGGTTGTGGACAATGACTTTGGCAGTTTTCTGGATGCATATGGAGAGGTAACATTCGATAACTTTTGGTCACAACCGTATGTGGCTGACGTCTCCCACGTTCCAAGCGAGCTACTTGTTCCCTCCGTGGTAGAATCTGAATATTTTACTCCAATCTACGATGATCTCTGGGGTCAAAGTCATTTTGTACAATCAAACTTTTAG 900 0.4156 MVRTPSCDKSGLRKGTWTPEEDRKLVAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYLRPNLKRGNFTPQEEECIIRMLKNLGNRWSAIAAELPGRTDNEIKNHWHTTLKKKYQQNTVTNEDARASKSKKKDSVPNKNGVTVRLPATSQISDNSSFSPVSSSSSEFSSLSSDLSSCTSMENLLFEDDLGFLDSYVNESFWKELNLDGVPCESRDTTSTEMVDSCASSESVVVDNDFGSFLDAYGEVTFDNFWSQPYVADVSHVPSELLVPSVVESEYFTPIYDDLWGQSHFVQSNF* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0980 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vra2g0980 299 CDD SANT 69 112 IPR001005 -
Vra2g0980 299 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra2g0980 299 CDD SANT 16 61 IPR001005 -
Vra2g0980 299 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 230 - -
Vra2g0980 299 MobiDBLite consensus disorder prediction 115 148 - -
Vra2g0980 299 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 230 - -
Vra2g0980 299 Gene3D - 14 66 - -
Vra2g0980 299 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vra2g0980 299 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra2g0980 299 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vra2g0980 299 SMART sant 66 114 IPR001005 -
Vra2g0980 299 SMART sant 13 63 IPR001005 -
Vra2g0980 299 Gene3D - 69 142 - -
Vra2g0980 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vra2g0980 299 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0980 Vra-Chr2 10173339 10174667 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0980 1 267 MYB Transcription Factor Family AT2G31180 40.659 3.21e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra2g0980 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0980 K09422 - gmx:100777107 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0980 2 10173339 10174667 Vra2g0979 2 10131174 10136014 PCT
Vra2g0978 2 10107138 10108149 Vra2g0980 2 10173339 10174667 PCT