Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0979 ATGATGGTGAGAACCCCGAGCAGTGACAAAAATGGACTGAAGAGAGGAACATGGACACCAGAGGAAGACAAGAAGTTGGTTGATTATATTACTAGGTATGGTCACTGGAATTGGCGCCTTCTCCCCCAGTTCGCAGGTCTTGCGAGATGTGGAAAGAGTTGCAGACTTAGGTGGTTGAATTACCTAAGGCCAAACCTGAAAAGAGGAAACTACACTGAGGAAGAGGAAGAAACTATCATCAAGCTGCACCGACATCTCGGAAACAGATGGTCTGCTATTGCTGCACAGATTCCAGGAAGAACAGACAATGAAATAAAAAACTACTGGAACACCAACCTCAAGAAACGATTTGAACAAGACAGAGCCACAGAATCTCAAGTTTCAAACTCATGTGAACGATCCTCAACAACAACAACAACTGAAGCAAGTGCAAATACATTTTCCCAGCATTCATCATCCTCTGCAACAAGCGCAGAATTTAACACTGTAACCATCAACGAAAATCTGGATCTGCAAGATGAATTTTCCTTTTGGGACGCTGACACAGATCTTGTGAGTGCCAATTTCTGGTTAGAGCCATATATACATGATATTTCATACGCAGCTACTGAACCTGAGTTCTTCACTTTTGATGCACAACTTTGGAGCCATGATAACTGA 660 0.4273 MMVRTPSSDKNGLKRGTWTPEEDKKLVDYITRYGHWNWRLLPQFAGLARCGKSCRLRWLNYLRPNLKRGNYTEEEEETIIKLHRHLGNRWSAIAAQIPGRTDNEIKNYWNTNLKKRFEQDRATESQVSNSCERSSTTTTTEASANTFSQHSSSSATSAEFNTVTINENLDLQDEFSFWDADTDLVSANFWLEPYIHDISYAATEPEFFTFDAQLWSHDN* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0979 219 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Vra2g0979 219 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 2 201 - -
Vra2g0979 219 MobiDBLite consensus disorder prediction 120 151 - -
Vra2g0979 219 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Vra2g0979 219 Gene3D - 15 67 - -
Vra2g0979 219 MobiDBLite consensus disorder prediction 123 151 - -
Vra2g0979 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vra2g0979 219 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 201 - -
Vra2g0979 219 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vra2g0979 219 CDD SANT 81 113 IPR001005 -
Vra2g0979 219 SMART sant 67 115 IPR001005 -
Vra2g0979 219 SMART sant 14 64 IPR001005 -
Vra2g0979 219 Gene3D - 70 145 - -
Vra2g0979 219 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Vra2g0979 219 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Vra2g0979 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Vra2g0979 219 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0979 Vra-Chr2 10131174 10136014 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0979 2 190 MYB Transcription Factor Family AT2G31180 49.206 3.47e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra2g0979 Myb_DNA-binding 6.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0979 K09422 - gmx:100778518 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0980 2 10173339 10174667 Vra2g0979 2 10131174 10136014 PCT
Vra2g0979 2 10131174 10136014 Vra2g0982 2 10203775 10204692 PCT