Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0978 ATGAATTACCTAAGGCCAGGCATCAAAAGAGGGAACTACACTTATGAAGAAGAAGAGATAATTATCAAACTGCACCAAATTCATGGAAACAGGTGGTCAGTGATTGCCTCCCACTTACCTGGAAGATCAGATAACGAGATAAAAAATCACTGGCATGCACATCTTAAGAAGCGCTTTCAACACAATTCAGAAACAAATGAAAAAGTTGAAGCCTCCACCTCAAAACAGCACTCCCTAGTAGAATCCATTCAAGAGGAATCTGGGGAAGTTGTTGCAAGCAGTTTCCAGAACAGTTGCCTAGCTACTTCCCAAACTCCTGACAGTGATTTTCCATCGCCCCAGCACACATCATTGAGAGATGCTCTGTGCATGATATCTGAACTAGAACCTGAAGCAGCCAGTAATGGGAATTTGGCTACTGATAACTTTGCTGACTTTATGGAGCAAAACACAGATCCTATCAGTGCATATTCTTGGGAAGAACTTTATGAAATTTCATACTTATGTGAATTTCTCGCTCCTTTGTACTGA 531 0.4105 MNYLRPGIKRGNYTYEEEEIIIKLHQIHGNRWSVIASHLPGRSDNEIKNHWHAHLKKRFQHNSETNEKVEASTSKQHSLVESIQEESGEVVASSFQNSCLATSQTPDSDFPSPQHTSLRDALCMISELEPEAASNGNLATDNFADFMEQNTDPISAYSWEELYEISYLCEFLAPLY* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0978 176 ProSiteProfiles Myb-like domain profile. 5 55 IPR001005 -
Vra2g0978 176 SMART sant 9 57 IPR001005 -
Vra2g0978 176 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Vra2g0978 176 Gene3D - 12 84 - -
Vra2g0978 176 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 124 - -
Vra2g0978 176 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 124 - -
Vra2g0978 176 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 59 IPR017930 -
Vra2g0978 176 CDD SANT 12 55 IPR001005 -
Vra2g0978 176 SUPERFAMILY Homeodomain-like 1 63 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0978 Vra-Chr2 10107138 10108149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0978 1 112 MYB Transcription Factor Family AT3G23250 50.893 1.77e-29 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra2g0978 Myb_DNA-binding 1.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0978 K09422 - gmx:106799185 209.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0978 2 10107138 10108149 Vra2g0980 2 10173339 10174667 PCT