Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0972 ATGAAGAAGTGCGAACTGTGTAAGCTTCCGGCCAGGATTTTCTGCGAGTCGGACCAGGCCAGCTTATGCTGGGACTGCGACGCAAAGGTTCACGGCGCAAACTTCTTGGTCGCCAGACACTCGCGAACCCTCCTCTGCCGTACGTGCCACTCTACCACGCCGTGGAAGGCCGCCGGAGCCAGACTCTCTAACGCCGCCTCCATCTGCCACCGCTGCGCGGCCTCCGCCGCCGAAGAACCGGACGAGACCGAATCCGGCAATGACGAGGAACCAAACACGGAGGATGACGATGTATCCGGCGAGGAAGACGGCGAGAACCAGGTCGTGCCGTGGTCCTCCACACCGCCTCCGCCGGCGAGCTCCTCCAGCAGCGAGTGGTCGTCGTTCAGCGGGTGCAAAAACGACGACGACGAAGGTGCTTCTGTTTCCGTATGTGAACCGGAAACGACAACATCCTCGTTGAAACGGCAACGCGAGAACGACGACGTATCCGGCCGTGATCCGCAGGGGTTTGGAAGGGCTGCGCATCTCAACGGAGGTGGTGTATGA 549 0.612 MKKCELCKLPARIFCESDQASLCWDCDAKVHGANFLVARHSRTLLCRTCHSTTPWKAAGARLSNAASICHRCAASAAEEPDETESGNDEEPNTEDDDVSGEEDGENQVVPWSSTPPPPASSSSSEWSSFSGCKNDDDEGASVSVCEPETTTSSLKRQRENDDVSGRDPQGFGRAAHLNGGGV* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0972 182 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Vra2g0972 182 MobiDBLite consensus disorder prediction 77 182 - -
Vra2g0972 182 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 165 - -
Vra2g0972 182 MobiDBLite consensus disorder prediction 152 166 - -
Vra2g0972 182 CDD Bbox1_BBX-like 3 45 - -
Vra2g0972 182 Pfam B-box zinc finger 2 42 IPR000315 GO:0008270
Vra2g0972 182 PANTHER - 1 165 - -
Vra2g0972 182 MobiDBLite consensus disorder prediction 81 103 - -
Vra2g0972 182 SMART bboxneu5 1 45 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0972 Vra-Chr2 10003151 10004315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0972 2 118 C2C2-CO-like Transcription Factor Family AT5G54470 47.761 3.58e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra2g0972 zf-B_box 4.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0972 - - vun:114168631 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0972 2 10003151 10004315 Vra2g0972 2 10003151 10004315 PCT