Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0971 ATGGTGAGAACCCCATCTTCTAACAAAAGTGGACTGAGGAAGGGTCTTTGGTCTCCCGAGGAAGATACCAAATTAGTTGCCTATATTACTAGATATGGTCACAGGAATTGGAGCCAACTTCCCAGGTTTGCAGGTCTGGCAAGATGTGGGAAAAGTTGTAGATTGAGATGGATGAATTATCTCAGGCCTAACGTCAAAAGAGGCAACTTCACTCCACAAGAAGAAGATTGCATCATAAGAATGCACAAAAAACTTGGTAACAAATGGTCTGCTATTGCGGCTGAGTTACCAAATCATTAA 300 0.42 MVRTPSSNKSGLRKGLWSPEEDTKLVAYITRYGHRNWSQLPRFAGLARCGKSCRLRWMNYLRPNVKRGNFTPQEEDCIIRMHKKLGNKWSAIAAELPNH* 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0971 99 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra2g0971 99 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 99 IPR017930 -
Vra2g0971 99 CDD SANT 69 98 IPR001005 -
Vra2g0971 99 CDD SANT 17 61 IPR001005 -
Vra2g0971 99 SUPERFAMILY Homeodomain-like 11 98 IPR009057 -
Vra2g0971 99 SMART sant 13 63 IPR001005 -
Vra2g0971 99 SMART sant 66 98 IPR001005 -
Vra2g0971 99 Gene3D - 69 99 - -
Vra2g0971 99 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 97 - -
Vra2g0971 99 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 97 - -
Vra2g0971 99 Gene3D - 11 67 - -
Vra2g0971 99 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vra2g0971 99 Pfam Myb-like DNA-binding domain 67 99 IPR001005 -
Vra2g0971 99 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra2g0971 99 ProSiteProfiles Myb-like domain profile. 62 99 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0971 Vra-Chr2 9983896 9984839 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0971 1 97 MYB Transcription Factor Family AT2G31180 64.948 7.54e-45 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra2g0971 Myb_DNA-binding 6.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0971 K09422 - vra:111241276 215.312