Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0970 ATGGTGAACACCAAGAGAAAGACCAGAAGGATAGTTATCCTTAACTGGTCCTCCAGTTTCATGATGTCTATCTTCCTCTTCTGCTCATTGCTTTTCATTTCTAGTTTTAAGCATTGCTCAGCCACAGATGCTATAACCATTAACGAATTCTTGCAAGATGGTGGAGGGGATACTCTAATTTCAAAAGGAGGAAAGTTTGAGCTGGGATTTTTCACTCCTAATGGCAGCTCTAGTGGCAGAAGATATGTGGGAATATGGTACTACAAGTTAACGCCTTTAACAGTTGTGTGGGTTGCTAACCGAGACAAGCCACTTCTAGATTCTTGGGGTGCTTTTGGCATTAGTGAAGATGGGAATCTAAAGGTTTTGGACAGAAGGGGGAAAGCCTGCTGGGGCACAAACCTTGAAGGATCAGCTTCACAACACAGAACATTGAAGATAATGGACAGTGGGAACCTTATTGTCAGTGATGAAGTTGGAGGGCAAGGGGATCATCAAGTGAAGATTCTGTGGCAGAGTTTTGCTAATCCAACAGATACATTCCTTCCTGGAATGAAAATGGACGGCAATTTAGCACTAACATCATGGAGAAGTTATGAAGACCCTGCACCGGGGAACTTCACTTTTGTGCATTGTCAAGGGGAGAACCAGTTCGTCATATGGAAGAGGTCCATCAAGTATTGGAAAAGCAGTGTTTCAAGTAGGTTTGCAGGAAGTGATGAGATGTCTCCAGCAATATCTTACTTGCTTTCAAATTTTACCCTAAGAGTATCCCCAAACGACACTGTTCCCTTTCTCACTTCAGCACTTTATCGTGACACAAGGTTGGTCATGACACACTGGGGTCAACTTAAGTACATGAAAATGGATTCAGAGAAAGTGTGGTTGTTGGTTTGGGTGGAGCCAAGAGATAGATGCAGTGTGTTCAATGCCTGTGGAAACTTTGGAACCTGTAATAGCAAGTTTGACTCCATGTGCAAGTGTTTGCCTGGGTACAAGCCTAATTCTATTGAGAGTTGGAATGCTGGAGACTTTTCAGGTGGATGCAGCAGAAAAACAAATGTCTGCAGTGGGGATGCTACGAAAGCTACATTTTTGAGTTTGAAAATGATGAAAGTAGGGAACCCGGATGCTCAATTTAATGCCAAGAATGAAGAGGAATGCAAATCAGAGTGCCTAAACAATTGCCAGTGCTATGCATATTCGTATGAAAGCACCCAAAAGGATGCTGTTTGCTGGATTTGGTATGAGGACTTGAACAATCTTGAAGAAGAGTACGAGGATGGGTGTGACCTGCATGTTCGCGTGGCATTTTCTGATATAGAATCCACTGGGAACAGCTGTGGAACTTGTGGTACAAATTTCATTCCATATCCCCTAAGCACAGGACCAAGTTGTGGTGACCCCATGTACTTCAGTTTTCAATGCAACAACTCCTCTGGTGAGCTTGATTTTAAAATTCCAGGGGGAACCTATCCAGTGATTAGCATAAACCCGGACACACGAAAATTCTTGATTCACAGAAAAGATGTACTTAACTGTGATCAGATTTCAAGGGATAAGTCTCTGTCTCTCAATCAGTCATTTCCATTTCACCTTACTGGCTATTGTCATGCTGCTGATCCAAGCATTTTTAGTTCTAATGCTCCCATGAAACAAGGAGTAGAAATAGAATTCAGTTGGGAGCCCCCAACTGAGCCTACGTGCTCTTCGTTGTTGGACTGCAAGGATTGGCCAAATTCAACTTGCAACACTACCAGAGATGGCAAGAAGGGATGTCTTTGCAACACAAACTTTATTTGGGATGGATTGAAATTAAACTGCACTCTAGAAGACAATAATATCTATCAATCAGAAAGGCAACTATCCTTACCAAAGATCATTGTAATTACTTTTACATCTGTGATTGGTTTAATTCTTCTGTCAACTACTGTTACATGTGTTTACTTGAGGAAGAGGAGACAGAGAAAACCACAAGATAGCAGGGGATATGTTCAGAAAAACTCAGGGATTAACTTGTATGACAGTGACAAATATGTCAGAGAATTGATTGAATCTGGTAGGTTCAAAGAAGAGGATGCGCAGGCCATAGATATTCCATTTTTCCCTTTAGAAAGCATACTTGGGGCCACTAACAATTTTGCAAATGCCAACAAGCTTGGACAAGGAGGGTTTGGTCCTGTCTACAAGGGAAAATTTCCCGGAGGACAAGAAATAGCGGTGAAGAGACTCTCAAGTTGTTCTGGACAAGGTTTAGAAGAATTTAAAAACGAAGTTGTGTTGATTGCAAAGCTTCAACATAGAAACCTGGTGAGACTTCTGGGGTACTGCGTGGAAGGAGATGAAAAGATGCTGGTATACGAATATATGCCAAATAGAAGCTTGGATGCTTTCATTTTTGACCAGAAGCTTTGTGTTCAATTAGACTGGGATGTGCGCTTCAAGATTATTCTGGGGATTGCTCGAGGGCTCCTTTACTTGCATGAAGATTCTAGGTTGAGGATTATTCATAGGGACTTGAAAACAAGTAACATTCTACTAGATGAAGAGAAGAATCCAAAAATCTCAGACTTTGGCTTAGCCAGAATATTTGGAGGAAAAGAGACAGTAGCTAACACAGATAGAGTGGTTGGAACATATGGATATATGTCTCCAGAGTATGCTCTTGATGGACACTTTTCAGTCAAGTCTGACGTCTTTAGCTTTGGTGTGGTGGTACTTGAGATTATCAGTGGAAAAAGGAACACAGGATTTTATCAAGCAGAACATAAATTGAGTCTTCTGGGATATGCATGGCTTTTGTGGAAAGAAGGAAGGGAATTGGAATTCATGGATGAAACATTAAGTCAAACATGCAATGCAGATGAATGCTTGAAATGTGTGAATGTGGGGCTTTTGTGCTTACAAGAAGACCCAAATGAACGTCCTACAATGTCAAATGTGGTTTTCATGCTTGGTAGTGAATCTAACACTCTTCCAAGTCCTAAGGAACCAGCCTTTGTTATCAGAAGATGCCCTTCAAGTAGAGCATCTACTTCGAGTAAACTTGAAACCTTTTCACGTAATGAATTGACAGTCACTATAGAACATGGCAGGTAG 3099 0.4137 MVNTKRKTRRIVILNWSSSFMMSIFLFCSLLFISSFKHCSATDAITINEFLQDGGGDTLISKGGKFELGFFTPNGSSSGRRYVGIWYYKLTPLTVVWVANRDKPLLDSWGAFGISEDGNLKVLDRRGKACWGTNLEGSASQHRTLKIMDSGNLIVSDEVGGQGDHQVKILWQSFANPTDTFLPGMKMDGNLALTSWRSYEDPAPGNFTFVHCQGENQFVIWKRSIKYWKSSVSSRFAGSDEMSPAISYLLSNFTLRVSPNDTVPFLTSALYRDTRLVMTHWGQLKYMKMDSEKVWLLVWVEPRDRCSVFNACGNFGTCNSKFDSMCKCLPGYKPNSIESWNAGDFSGGCSRKTNVCSGDATKATFLSLKMMKVGNPDAQFNAKNEEECKSECLNNCQCYAYSYESTQKDAVCWIWYEDLNNLEEEYEDGCDLHVRVAFSDIESTGNSCGTCGTNFIPYPLSTGPSCGDPMYFSFQCNNSSGELDFKIPGGTYPVISINPDTRKFLIHRKDVLNCDQISRDKSLSLNQSFPFHLTGYCHAADPSIFSSNAPMKQGVEIEFSWEPPTEPTCSSLLDCKDWPNSTCNTTRDGKKGCLCNTNFIWDGLKLNCTLEDNNIYQSERQLSLPKIIVITFTSVIGLILLSTTVTCVYLRKRRQRKPQDSRGYVQKNSGINLYDSDKYVRELIESGRFKEEDAQAIDIPFFPLESILGATNNFANANKLGQGGFGPVYKGKFPGGQEIAVKRLSSCSGQGLEEFKNEVVLIAKLQHRNLVRLLGYCVEGDEKMLVYEYMPNRSLDAFIFDQKLCVQLDWDVRFKIILGIARGLLYLHEDSRLRIIHRDLKTSNILLDEEKNPKISDFGLARIFGGKETVANTDRVVGTYGYMSPEYALDGHFSVKSDVFSFGVVVLEIISGKRNTGFYQAEHKLSLLGYAWLLWKEGRELEFMDETLSQTCNADECLKCVNVGLLCLQEDPNERPTMSNVVFMLGSESNTLPSPKEPAFVIRRCPSSRASTSSKLETFSRNELTVTIEHGR* 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0970 1032 ProSiteProfiles Bulb-type lectin domain profile. 44 168 IPR001480 -
Vra2g0970 1032 Gene3D - 37 176 IPR036426 -
Vra2g0970 1032 CDD B_lectin 54 177 IPR001480 -
Vra2g0970 1032 CDD PAN_AP_plant 356 437 - -
Vra2g0970 1032 ProSitePatterns Serine/Threonine protein kinases active-site signature. 835 847 IPR008271 GO:0004672|GO:0006468
Vra2g0970 1032 Gene3D Transferase(Phosphotransferase) domain 1 790 995 - -
Vra2g0970 1032 Pfam Protein tyrosine and serine/threonine kinase 717 983 IPR001245 GO:0004672|GO:0006468
Vra2g0970 1032 ProSiteProfiles PAN/Apple domain profile. 356 430 IPR003609 -
Vra2g0970 1032 Pfam Domain of unknown function (DUF3403) 987 1032 IPR021820 GO:0004674
Vra2g0970 1032 SMART blect_4 50 177 IPR001480 -
Vra2g0970 1032 Gene3D Phosphorylase Kinase; domain 1 678 789 - -
Vra2g0970 1032 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 41 1029 - -
Vra2g0970 1032 SMART ntp_6 360 436 IPR003609 -
Vra2g0970 1032 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 41 1029 - -
Vra2g0970 1032 SUPERFAMILY alpha-D-mannose-specific plant lectins 95 201 IPR036426 -
Vra2g0970 1032 ProSiteProfiles Protein kinase domain profile. 714 1000 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0970 1032 Pfam PAN-like domain 361 421 IPR003609 -
Vra2g0970 1032 SUPERFAMILY Protein kinase-like (PK-like) 697 985 IPR011009 -
Vra2g0970 1032 SMART serkin_6 714 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0970 1032 Pfam S-locus glycoprotein domain 233 335 IPR000858 GO:0048544
Vra2g0970 1032 ProSiteProfiles EGF-like domain profile. 302 338 IPR000742 -
Vra2g0970 1032 CDD STKc_IRAK 720 985 - -
Vra2g0970 1032 Pfam D-mannose binding lectin 94 191 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0970 Vra-Chr2 9961109 9966191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0970 707 1003 Receptor kinase-like Gene Family AT4G23230 60.269 4.28e-123 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra2g0970 PK_Tyr_Ser-Thr 4.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0970 - - var:108339799 2064.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0970 2 9961109 9966191 Vra2g0970 2 9961109 9966191 PCT
Vra2g0970 2 9961109 9966191 Vra5g2795 5 35316959 35322623 PCT