Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0961 ATGATTCCAGCGAGAAACATGCCGTCGATGATAGCTAGGAAGAACAAGAACAACCTTGGTGGGTTTGGATCATCGTCTTCAACTTTCACTCTTTCGCAAACAATGTTCCAGCCGAACCTTATGGAAGCCTTGGAGATGGGTCAGAACACTTCGGAGAGTGAGGTTCCTCGAATCCGTGAAGATGAGTTCGACAGTGCCACCAAGTCTGGTAGTGAAAACCATGAAGGTGCCTCTGGCGAAGACCAAGACCCTCGTCCCAACAAGAAGAAGCGTTACCACCGCCACACCCAACACCAGATCCAGGAAATGGAAGCATTCTTCAAGGAGTGTCCACACCCAGATGACAAACAAAGGAAAGAACTGAGCAGGGAATTAGGGTTAGAACCATTGCAGGTTAAGTTTTGGTTTCAGAACAAACGTACCCAGATGAAGACACAGCACGAGCGGCATGAGAATACACAACTTAGAACCGAGAACGAGAAGCTTCGAGCTGATAACATGAGGTATAGGGAAGCTCTTAGCAATGCTTCGTGTCCTAATTGTGGTGGACCAACCGCAATAGGAGAAATGTCATTTGATGAACATCACTTGAGGCTTGAGAATGCAAGGCTTAGAGAAGAGATTGACAGGATTTCAGCAATTGCTGCTAAGTATGTAGGTAAACCTGTGGTGAATTATTCAAATATTTCTCCTTCCCTCCCTCCTCGTCCTCTAGAACTTGGGGTTGGTGCTGGTTTTGGAGGCCAGCCAGCTATTGGTGTGGACATGTATGGAGCTGGAGATCTTCTGAGATCAATTAGTGGACCCACTGAAGCTGATAAACCCATCATAATAGAGCTAGCCGTTGCAGCTATGGAGGAGCTCATTGGAATGGCACAAATGGGTGATCCCCTTTGGTTAACTACTCTTGATGCCACATCTACTATCCTCAATGAGGACGAATACATCAGATCTTTCCCTCGAGGAATTGGTCCAAAACCTACTGGTTTCAAATGTGAAGCTTCTCGAGAAACTGCTGTTGTTATCATGAACCATGTCAGCCTCGTTGAGATTCTCATGGATGTTAACCAATGGTCCACAGTGTTCTCTGGTATAGTCTCAAGAGCCATGACTCTGGAAGTGCTATCCACAGGAGTGGCTGGGAACTACAACGGTGCCTTACAAGTGATGACAGCAGAATTGCAACTACCTACCCCTCTTGTGCCAACTCGTGAGAGTTATTTTGTAAGGTATTGTAAGCAACATTCGGATGGAACTTGGGCAGTGGTGGATGTGTCTCTGGATAATTTGCGTCCTAGTCCTTCAGCCAGATGTAGGAGAAGACCTTCTGGTTGCTTAATTCAGGAAATGCCAAATGGCTATTCAAAGGTCACGTGGGTCGAACATGTTGAAGTGGATGACAGAGGTGTTCATAATCTTTACAAACAGCTTGTTAGTTCTGGACATGCATTTGGTGCCAAACGTTGGGTTGCAACCTTGGATAGACAGTGTGAAAGACTTGCCAGTGCTATGGCAACAAATATTCCCACAGTTGATGTTGGTGTGATAACAAACCAAGAGGGGAGAAAGAGTATGATGAAACTGGCTGAAAGGATGGTGATAAGCTTTTGTGCTGGAGTGAGTGCTTCCACTGCTCACACATGGACAACACTGTCTGGAACAGGTGCCGATGATGTAAGGGTGATGACCAGAAAGAGTGTGGATGATCCTGGAAGACCTCCTGGCATTGTTCTCAGTGCAGCCACTTCTTTTTGGCTTCCAGTTCCACCTAAACGAGTTTTTGACTTTCTCCGTGATGAGAACTCTAGGAATGAGTGGGACATTCTTTCCAATGGTGGAGTTGTGCAAGAAATGGCACACATTGCAAATGGACGAGATACTGGAAACTGCGTGTCTCTACTTCGAGTAAATAGTGCAAATTCAAGTCAGAGTAACATGTTGATACTGCAAGAGAGTTGCACCGATTCAACAGGGTCTTTTGTGATATATGCTCCAGTAGACATTGTTGCAATGAATGTAGTTCTAAATGGAGGAGACCCAGATTATGTGGCACTTCTTCCATCAGGATTTGCAATTCTCCCAGATGGAACTATATCTCACGAAACTGGAGCTGGTGGATCTCTTTTAACTGTTGCGTTTCAAATACTGGTTGATTCGGTTCCAACTGCTAAGCTTTCTCTAGGATCTGTTGCCACTGTCAACAATCTCATTGCATGCACGGTTGAGAGAATCAAAGCATCTTTATCTGGTGAATCTGCTTGA 2262 0.4531 MIPARNMPSMIARKNKNNLGGFGSSSSTFTLSQTMFQPNLMEALEMGQNTSESEVPRIREDEFDSATKSGSENHEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYSNISPSLPPRPLELGVGAGFGGQPAIGVDMYGAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGDPLWLTTLDATSTILNEDEYIRSFPRGIGPKPTGFKCEASRETAVVIMNHVSLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQLPTPLVPTRESYFVRYCKQHSDGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWVATLDRQCERLASAMATNIPTVDVGVITNQEGRKSMMKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTISHETGAGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGESA* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0961 753 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 43 750 IPR042160 -
Vra2g0961 753 ProSiteProfiles 'Homeobox' domain profile. 86 146 IPR001356 GO:0003677
Vra2g0961 753 Gene3D - 327 496 IPR023393 -
Vra2g0961 753 MobiDBLite consensus disorder prediction 62 87 - -
Vra2g0961 753 MobiDBLite consensus disorder prediction 62 97 - -
Vra2g0961 753 ProSiteProfiles START domain profile. 270 502 IPR002913 GO:0008289
Vra2g0961 753 SMART HOX_1 87 150 IPR001356 GO:0003677
Vra2g0961 753 CDD homeodomain 89 147 IPR001356 GO:0003677
Vra2g0961 753 Gene3D - 75 163 - -
Vra2g0961 753 Coils Coil 152 172 - -
Vra2g0961 753 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 43 750 - -
Vra2g0961 753 MobiDBLite consensus disorder prediction 1 21 - -
Vra2g0961 753 CDD START_ArGLABRA2_like 274 498 - -
Vra2g0961 753 ProSitePatterns 'Homeobox' domain signature. 121 144 IPR017970 GO:0000981|GO:0006355
Vra2g0961 753 Pfam START domain 280 499 IPR002913 GO:0008289
Vra2g0961 753 SUPERFAMILY Bet v1-like 270 501 - -
Vra2g0961 753 Pfam Homeodomain 89 144 IPR001356 GO:0003677
Vra2g0961 753 SUPERFAMILY Bet v1-like 518 745 - -
Vra2g0961 753 SMART START_1 279 499 IPR002913 GO:0008289
Vra2g0961 753 SUPERFAMILY Homeodomain-like 78 146 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0961 Vra-Chr2 9765050 9771268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0961 35 753 Homeobox Transcription Factor Family AT1G05230 78.308 0.0 1173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra2g0961 START 3.8e-59 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0961 K09338 - gmx:100782260 1414.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0961 2 9765050 9771268 Vra2g0961 2 9765050 9771268 ECH
Vra5g2758 5 34775048 34782008 Vra2g0961 2 9765050 9771268 PCT