Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0958 ATGGCTATGGGGAGAACACTGTTCCTCTTTGTTTTGTGCTTGTGGATTCCCCTGGAAGTGGTGGGGAGGAAAGAACCCTCTTCACCTACCAGTGTGGATTCCTCTGTTTCTTCAAGACCGAAGGTTGTGAAATTTGGAGCCCTCTTTCCTATGGATTCTGTCATTGGAAGATCTGCTTTACCTGCAATTTTGGCTGCTGTTAAAGATGTTAATTCTAGCACGAGCATTCTCCCTGGCATTGACCTGCAAGTCATTTTGCACAGCACAAATTGCAGTGCGTTTCTTGCAACAATGGAAGCTCTGCAATTGATGGAGAATGATGTGGTTGCTGTTGTTGGTCCACTGTCATCTGGAACAGCTCATATAATCTCTCATGTTGTTAATGAACTCCATGTACCTCTTCTGTCGTTTGGGGCCACTGACCCCACTCTTTCTTCTCTGCAGTACCCATATTTTATCCGCACTACTCAGAACGACTATTTTCAGATGTATGCAGTTTCAGCCTTTATTAATTATCACAGATGGAGGGAGGTAATTGCCATCTATGTAGATGATGACAATGGCAGGAATGGAATTTCTGTATTGGGTGATGCACTGTCGAAGAAACGTTCCAAGATCTCTTACAAGGCTGCTTTTTCTCCTGGGGCCTCAGAAAGTGATATCAGTGACTTATTGAATGAAGTGAACTTGATGGAATCGCGGGTCTATGTTCTGCATGTGAATCCTGATACTGGTTTAGCAATTTTCTCCATTGCCAAGAAGCTCGGAATGATGGGCAGTGGCTATGTTTGGATTGCAACAGATTGGCTTCCTTCAGTGCTGGATTCCTCAGAGTCACCTGACCCTGACACAATGAATCTCTTACAAGGGATTGTGGCTTTTCGTCATCACATTCCTGACACTGATCTCAAGGAGAATCTTCTCTCCAGCTTGAAAAGCCAAAGGGCCAAAGAGACCGTAAGCTTCAATTCTTATGCATTTTATGCTTATGATTCTGTTTGGTTAGCAGCTCGTGCTCTTGATGCTTATCTCAATGAAGGGGGAAACATTTCTTTCTCTAGTGACCCTAAGTTGCAAGACACAAATGGAAGCTTGTTGCATTTAGCTTCACTTCGTACATTTGATGGTGGTCCACAGTTTCTCCAGACAATTTTGGGAATGAACTTCACTGGTGTGAGTGGTCAAATTGAGTTTGACATGGACAAGAATCGAGTTCATCCAGCATATGAAATTCTCAATATTGGTGGTAGTGGATCCCGTAGAATTGGTTACTGGTCTAATCATTCTGGTCTGACAGTTGTAGCTCCTGAAACTTTATATCTGAAAAAATCATCAAACACATCTTTGATGAGAAATCAACAACTTTACAGTGTGATATGGCCTGGAGAGATTACAACTACACCAAGAGGGTGGGTGTTTCCCAACAATGGACAACCACTTAGGATAGCAGTTCCTAACAGAGTGAGCTACAAGGACTTTGTTTCTAAGGACAACAACCCGCCAGGGGTACAAGGCTATTGCATTGACGTTTTTGAAGCAGCCTTGAAATTGTTGCCTTACCCTGTCCCACGAAAATACATGTTATTTGGAAATGGTGTAAGGAATCCTAGCTACAACGAGCTTGTGGAACAAGTTGCACAAAATAACTTTGATGCAGCTGTTGGAGATGTTACAATTGTCACAAATAGGACAAGGATTGTGGATTTTACTCAACCTTTCATGCCATCAGGGCTTGTTGTTGTTGTTCCTTTTAAAGAGCAGAAATCAAGCCCTTGGTCTTTCCTTCAGCCATTCACTACTGAAATGTGGTGTGTCACTGGTGCTTTCTTTCTTTTTGTTGGAAGTGTTGTATGGATTCTTGAGCACAGGCTCAATCCTGAGTTCCGGGGCTCACCGAGGAAACAACTTATAACAGTGTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGGGAGAACACTGTGAGTGGACTTGGACGATTGGTGCTAATCATATGGCTCTTTGTGGTGTTGATCATAAATTCAAGCTACACAGCTAGCTTGACCTCTATCCTCACTGTGCGGCAACTGTCATCTCAAATTGAAGGAATTGATAGCTTGATCTCAAGTACACTACCGATTGGAATTCAAGATGGTTCATTTGCACGCAAGTATCTTGTAGATGACCTCAATATAGCTGAATCTAGAATAGTTACGCTGAAAAACATGGAGGATTATATTGATGCCCTTCAGCGAGGACCTCAAGCTGGAGGAGTTGTGGCAGTTGTTGACGAGCTTCCTTACATTGAACTCTTGATGTCCAGCAGTCAGTGTAAATTCAGAACTGTTGGCCAGGAGTTCACTAAAAGTGGCTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCTGTTGACTTGTCAACCGCCATTCTTCAACTCTCTGAGAGTGGTGACCTGCAAAGGATTCATGACAAATGGCTTAACAGAAAGGAGTGTACAACCGTAGATGTTGATTCAAACAAACTAGCTCTGACAAGCTTCTGGGGCCTCTTTCTTATATGTGGCATTGCATGTTTCATTACCCTCATAATTTTCTTTGCCAGAATCTTCTGTCAATATAACAAATTCATCCCAGAATCTGAGAAAACTGATGAGGAACTCCAACCAGTGAGGAGGTCTAGACGTCCAAGCAGAACTCCTAGCCTAAAGAAGTTGATGGTATTTGTAGATAAAAGGGAAGCAGAAGTCAAAGAGATACTTAGGGAAAACAAGAAAAGGAGACACAGCCAAAGCTTGGATGATCCTTCTGTTTCATCAACCATCTAG 2808 0.427 MAMGRTLFLFVLCLWIPLEVVGRKEPSSPTSVDSSVSSRPKVVKFGALFPMDSVIGRSALPAILAAVKDVNSSTSILPGIDLQVILHSTNCSAFLATMEALQLMENDVVAVVGPLSSGTAHIISHVVNELHVPLLSFGATDPTLSSLQYPYFIRTTQNDYFQMYAVSAFINYHRWREVIAIYVDDDNGRNGISVLGDALSKKRSKISYKAAFSPGASESDISDLLNEVNLMESRVYVLHVNPDTGLAIFSIAKKLGMMGSGYVWIATDWLPSVLDSSESPDPDTMNLLQGIVAFRHHIPDTDLKENLLSSLKSQRAKETVSFNSYAFYAYDSVWLAARALDAYLNEGGNISFSSDPKLQDTNGSLLHLASLRTFDGGPQFLQTILGMNFTGVSGQIEFDMDKNRVHPAYEILNIGGSGSRRIGYWSNHSGLTVVAPETLYLKKSSNTSLMRNQQLYSVIWPGEITTTPRGWVFPNNGQPLRIAVPNRVSYKDFVSKDNNPPGVQGYCIDVFEAALKLLPYPVPRKYMLFGNGVRNPSYNELVEQVAQNNFDAAVGDVTIVTNRTRIVDFTQPFMPSGLVVVVPFKEQKSSPWSFLQPFTTEMWCVTGAFFLFVGSVVWILEHRLNPEFRGSPRKQLITVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVRQLSSQIEGIDSLISSTLPIGIQDGSFARKYLVDDLNIAESRIVTLKNMEDYIDALQRGPQAGGVVAVVDELPYIELLMSSSQCKFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSESGDLQRIHDKWLNRKECTTVDVDSNKLALTSFWGLFLICGIACFITLIIFFARIFCQYNKFIPESEKTDEELQPVRRSRRPSRTPSLKKLMVFVDKREAEVKEILRENKKRRHSQSLDDPSVSSTI* 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0958 935 Gene3D - 158 431 - -
Vra2g0958 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 56 72 - -
Vra2g0958 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 116 144 - -
Vra2g0958 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 329 341 - -
Vra2g0958 935 Pfam Ligand-gated ion channel 823 852 IPR001320 GO:0015276|GO:0016020
Vra2g0958 935 Gene3D - 787 820 - -
Vra2g0958 935 Pfam Receptor family ligand binding region 60 415 IPR001828 -
Vra2g0958 935 PANTHER GLUTAMATE RECEPTOR 3.4 32 917 - -
Vra2g0958 935 SUPERFAMILY Periplasmic binding protein-like II 455 823 - -
Vra2g0958 935 SUPERFAMILY Periplasmic binding protein-like I 38 472 IPR028082 -
Vra2g0958 935 Pfam Bacterial extracellular solute-binding proteins, family 3 490 822 IPR001638 -
Vra2g0958 935 Gene3D - 742 786 - -
Vra2g0958 935 SMART GluR_14 481 823 IPR001320 GO:0015276|GO:0016020
Vra2g0958 935 Gene3D - 473 590 - -
Vra2g0958 935 CDD PBP1_GABAb_receptor_plant 44 435 IPR044440 -
Vra2g0958 935 MobiDBLite consensus disorder prediction 914 935 - -
Vra2g0958 935 CDD GluR_Plant 478 821 - -
Vra2g0958 935 PIRSF IGluLR_plant 1 934 IPR017103 -
Vra2g0958 935 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 917 - -
Vra2g0958 935 Gene3D - 62 406 - -
Vra2g0958 935 Gene3D - 591 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0958 Vra-Chr2 9738431 9743783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0958 39 788 Ion Channels AT1G05200 68.933 0.0 1101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0958 K05387 - gmx:100802782 1621.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0958 2 9738431 9743783 Vra2g0958 2 9738431 9743783 ECH
Vra5g2755 5 34744901 34749982 Vra2g0958 2 9738431 9743783 PCT
Vra2g0958 2 9738431 9743783 Vra5g2754 5 34736047 34741370 PCT