Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0925 ATGGAAGATCATCCACCTGGTTTTCGCTTCTTCCCAACAGAAGAAGAGCTTGTTGGCTTCTACCTACGCAACAAGCTAGAAGCTTCAAGAAATAATGCTGCTGCTGTTACTGCTGCCATAGATAGAGTTATTCCAGTTGTTGATATCAATGCCCTGGAACCATGGAACCTCCCAACACTTGCGGGGGAGCTTTGTCGTGGGGATACAGAGCAATGGTTTTTCTTTTCGCCTGGGCAAGAGAGAGAAGCCAGAGGAGGGAGACCTAGCAGAACCACAGCTTCTGGGTACTGGAAAGCTACTGGTTCACCTGGCTATGTTTATTCTTCTGATAACAGAGTCATTGGGGTGAAGAAATCCATGGTGTTCTACAAAGGAAAAGCTCCTATGGGAAGAAAAACCAAATGGAAGATGAACGAGTACAGAGCCATCTCCAACCCTGTCACCCCTCAGTTGAGATGCGAATTCAGCTTATATCGGGTTTATATCGTATCTGGAAGCTTTCGAGCATTTGATCGACGTCCATCAGAGACAGACGGAACAGAGTCACGTTTTTGTCAAAGTTCATCTCAATTGCGCCAACTTTCTCAGCTTTCTCAGCTCCCAGAAACTGGAGATTCAAGTAGCAGAAATTGGAACGAGGAACAGCTTCAAGAACCGTCATGGGAATTGGAATGGGAACACTTCAATTGGGTCGAACTCAAGAACTGA 708 0.459 MEDHPPGFRFFPTEEELVGFYLRNKLEASRNNAAAVTAAIDRVIPVVDINALEPWNLPTLAGELCRGDTEQWFFFSPGQEREARGGRPSRTTASGYWKATGSPGYVYSSDNRVIGVKKSMVFYKGKAPMGRKTKWKMNEYRAISNPVTPQLRCEFSLYRVYIVSGSFRAFDRRPSETDGTESRFCQSSSQLRQLSQLSQLPETGDSSSRNWNEEQLQEPSWELEWEHFNWVELKN* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0925 235 MobiDBLite consensus disorder prediction 194 213 - -
Vra2g0925 235 ProSiteProfiles NAC domain profile. 4 163 IPR003441 GO:0003677|GO:0006355
Vra2g0925 235 PANTHER NAC DOMAIN-CONTAINING PROTEIN 90 4 208 - -
Vra2g0925 235 Pfam No apical meristem (NAM) protein 5 141 IPR003441 GO:0003677|GO:0006355
Vra2g0925 235 Gene3D NAC domain 13 165 IPR036093 GO:0003677|GO:0006355
Vra2g0925 235 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 208 - -
Vra2g0925 235 SUPERFAMILY NAC domain 3 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0925 Vra-Chr2 9236913 9238093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0925 7 230 NAC Transcription Factor Family AT5G22380 55.745 5.95e-82 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra2g0925 NAM 6.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0925 - - gmx:100781321 354.755