Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0902 ATGTCGGCACCGCGCGCTCCTTCTGCTGCCGCCACCGCCACCGCCTCCTCCAACCCGCCCGATCAGATCATGCACTCCATGAAACGCCAACTCCCCTTCTCTTCCATGAAACCGCCCTTTGCCGCCGCCGGAGACTACCACCGCTTCGCCCCTGACCCCCGCCGCATCGACGCGGAAGCAGTCGTGGTCAAGACTCCTCAATTGAAGCGGAAGAGTGAAGTAGCTGATTTTGAAGCTGATTCTGGTGATAGGATGACTCCTGGGTCTACTGAACCAGCTAATAGTCCTTTTCGCACTCCAGTATCAGGAAAGACAGGGAAGGGTGGTAAATCCTCTAGGATGACAAAATGCAACAGACTTGGAACTCAAACTCCAGGCTCAAATATTGGTTCTCCTTCTGCCAATAATCTCACTCCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACCAAGAAGTTCATCAATTTGATCAAACAAGCTGAGGATGGTATCCTTGATCTGAATAAAGCTGCAGACACGTTAGAGGTGCAAAAGAGGAGGATATATGATATAACAAACGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAACTGAAGAACCGAATTCAATGGAAGGGATTGGATGTCTCAAGACCGGGAGAGGCTGATGATAGTTTTGCTAGTTTACAGGCAGAAGTTGAAAATTTAACAATGGATGAGCAGCGGTTAGATGAACAAATTAGTTTTCTAATTAATTGCAGGGAGATGCAAGAAAGACTGCGGGAGCTCAGTGAAGATGAAAACAATGAGAGGTTGCTTTTTGTTACTGAGGAAGATATAAAAAATTTACCCTGCTTCCAGAATGAGACCTTGATAGCAATTAAAGCACCTCATGGCACCACTTTGGAGGTCCCTGATCCTGACGAGGCTGTTGATTATCCGCAACGGAGATACAGGATAGTCCTCAGAAGCACAATGGGCCCCATAGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAAGATATTAATGGTGTTGATATTGCACCCAAACTTCCATCTAGTCCAGATGTTAACAAACATCAATCAACAGTGGTCCCGGAGGATAGAGGGAAGGGCGTAGATGTTCAGGGACCAGATGTTGGACCTAGTTCAGAGTTTACTACCTCTCAGGATTTCGTGAGTGGGATCATGAAGATTGTTCCTTCAGATGTTGCTAGTGAAGCAGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACCTGGAGTTGAATGGAATGAACTGGATCCGCTTCAGGAAGATTACTGTATGACTCGCGAGAATACTTCGACCCCAAGTCATCCTTCAAATGTAGGTGAAGTGTCTTCTACATCTAAACCCTCTGGAGGTTGA 1407 0.4584 MSAPRAPSAAATATASSNPPDQIMHSMKRQLPFSSMKPPFAAAGDYHRFAPDPRRIDAEAVVVKTPQLKRKSEVADFEADSGDRMTPGSTEPANSPFRTPVSGKTGKGGKSSRMTKCNRLGTQTPGSNIGSPSANNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFASLQAEVENLTMDEQRLDEQISFLINCREMQERLRELSEDENNERLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEDINGVDIAPKLPSSPDVNKHQSTVVPEDRGKGVDVQGPDVGPSSEFTTSQDFVSGIMKIVPSDVASEADYWLLSDADVSITDMWRTEPGVEWNELDPLQEDYCMTRENTSTPSHPSNVGEVSSTSKPSGG* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0902 468 Gene3D - 216 332 - -
Vra2g0902 468 SUPERFAMILY "Winged helix" DNA-binding domain 144 207 IPR036390 -
Vra2g0902 468 PANTHER TRANSCRIPTION FACTOR E2F 24 455 IPR015633 GO:0000978|GO:0006357
Vra2g0902 468 Coils Coil 222 242 - -
Vra2g0902 468 Gene3D - 138 211 IPR036388 -
Vra2g0902 468 PANTHER TRANSCRIPTION FACTOR E2FB 24 455 - -
Vra2g0902 468 Pfam E2F transcription factor CC-MB domain 225 331 IPR032198 GO:0046983
Vra2g0902 468 MobiDBLite consensus disorder prediction 73 115 - -
Vra2g0902 468 MobiDBLite consensus disorder prediction 434 468 - -
Vra2g0902 468 SMART E2F_TDP_2 144 209 IPR003316 GO:0005667|GO:0006355
Vra2g0902 468 MobiDBLite consensus disorder prediction 1 28 - -
Vra2g0902 468 MobiDBLite consensus disorder prediction 87 115 - -
Vra2g0902 468 MobiDBLite consensus disorder prediction 348 385 - -
Vra2g0902 468 Pfam E2F/DP family winged-helix DNA-binding domain 146 209 IPR003316 GO:0005667|GO:0006355
Vra2g0902 468 SUPERFAMILY E2F-DP heterodimerization region 223 332 IPR037241 -
Vra2g0902 468 Coils Coil 160 180 - -
Vra2g0902 468 Coils Coil 249 269 - -
Vra2g0902 468 MobiDBLite consensus disorder prediction 7 24 - -
Vra2g0902 468 MobiDBLite consensus disorder prediction 441 468 - -
Vra2g0902 468 CDD E2F_DD 220 332 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0902 Vra-Chr2 8939270 8945064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0902 22 467 E2F-DP Transcription Factor Family AT5G22220 55.372 2.98e-154 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vra2g0902 E2F_CC-MB 1.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0902 K06620 - gmx:100819817 796.964