Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0897 ATGGAGTCTCGGATGGATCAGTATGAGATCATGGAGCAGATCGGGCGAGGAGCATTTGGAGCTGCTATTCTTGTTCACCACAAGGCTGAGAAGAAGAAATATGTGTTGAAAAAAATCAGGCTTGCAAGACAGACTGAACGATGCAGAAGATCTGCTCATCAAGAAATGGCTCTTATTGCTCGAATCCAGCATCCTTACATTGTGGAATTCAAGGAGGCATGGGTTGAGAAGGGTTGCTATGTCTGCATTGTCACTGGGTATTGTGAAGGTGGAGACATGGCTGAATTGATGAAAAAATTAAATGGTGCTTACTTTCCTGAAGAGAAACTCTGCAAATGGTTCACTCAATTACTGTTGGCAGTGGAATACCTGCATTCAAATTTTGTTTTGCATCGTGACCTGAAGTGTTCCAACATCTTTCTTACCAAGGATCAGGATGTTCGCCTAGGGGATTTTGGCCTTGCTAAGACACTAAAAGCAGATGATTTGGCTTCCTCGGTGGTAGGAACTCCTAATTACATGTGTCCTGAACTGCTTGCTGATATACCGTATGGATTCAAATCTGATATTTGGTCACTAGGGTGTTGTATATACGAGATGGCTGCTCATCGCCCTGCTTTTAAAGCTTTTGATATGGCAGGGTTGATAAGCAAGATAAACCGTTCTTCCATTGGCCCTTTGCCTCCATGTTATTCCCCTTCCTTGAAAACACTGATAAAGGGCATGCTAAGAAAAAATCCTGAACATCGACCAACAGCATCTGAGGTGTTAAAGCACCCTTATTTACAGCCTTATGTGGATCAATACCGTCCAGCTTTCAGTCCTCCATCAACCTGTTCTGAAAAATCAATTTCTACTGTCAACTATCCTCGGAAAAATATGGCTGAAAGTCAAAACAGTAATAGTTCCAACAGTGACAAAGATAGTTCGATGTCAAATGAGAAAAGCATTGCAACAGCAGTACCAAAGTGTGATAACAAAGCCACTGAGATGGATCAAACATCACTCGATGATGATGGTTCAGAGGAAGAAAGTGGCTCTAGAAATGCCAATGACAATACCAAAACAGCTGAGCAAGAGGTGATGAAACCATCTCATAATGCACACCATTCTCCCGTTGAATCTAAGCAGCCAAAAACAATTAGAAATATAATGATGGCATTGAAAGAAGGAAAGGTTAGAGAAGCAACTTCTCCAATGAGAGGCAATCGTGTAAAGCCTGGTGGTGTATCAACACAGAAAATAAGTACTGAGACATTGTCTAAATTGCCTAAGCCTATTTTTATTGCTCCAATTGTGAAACCTATGGTAGAGTCACCAACAGTTGCACTTGCACGGGCAACCCCTGACTCTGCGAAAAGAATGCAGGGGTCACATCAATCAAAGCAACAGTTTCTGATGGTAGAAGCCTCACCAAAACTTAAATCTAGACATGATTTGACTCCACCACCTGCAGTTGTCAAACAAGTAGATGGAGATGTTGTTCCTCCCAGACCAAGACAAAGGACTCCCCCAAGCTTACTTAGAAGACCTTCATTTTCTGGAAGAATGAGGCTGGCTGGAATTGATGTTCCAAATGCACCAAATGATACTGGAAAGCTAGGCACAGATAAAATAGTTCAGGAACATGAGATGAGCCCTTCTCAGTTGGCTGACGACAATGTACCACCAAGTATTTCGGGACAGGTTACTAGAGAGCCCCAGAAGGTTTTTGAAAGAAGTTCCAGAGGAATGCAAACAGATAGCAGCAATTCTGCTTCGTCTTCGGTTTCTTTCCGAGGTGAACTTGCTGATGATGCCACAACTTTTATTGACATGAAAGAACAGATGCTTCCTGTACATTCAAATGTAAGCCACATTGGAGGTGTGGAATCATGTTCTGACAGCAGCCCGCTGACTACTTGTACACATTGTAAGGTGGTTGAAAATGTTCCTGAAGATTCATGTGAGATTGCCATGAATTTCCACAATACTATAAGCAGTAATGAGAAAGTGAATTCCAGTTTAAGTCAAGATCAGCATGTTGAAGATTCTAAGGTAGCACTTGTTTCAGAAAGGGGTCTTCTTAAATCCCAGCCAACTATGTCTACTACTTCTGGCTGTGATGATGGATCTGTTGATCCCTCTGCTGGAGCCACCAATGAAATCAAAGATTTTCAAGATATTACCAAGGAAATGCCTTTGGCCAAGTCTACCAAACACGCATCCCCAAGTTCTGAAGAAAAGTCTGTTCACACAGAAGTTAGTCCAGAAAGTGAAACCGAAATCCTTATTCAGCCAGCACTTGGATGTAAGTCCCCCGGTGATGACAAATTCACAGTGAGAGAGCGACTGTCACCTGTGGTTGAAACTGTTCCTCTGGTTACCCCTACTAAATTATCAAGCCAGAAAGTTTTGCAAGAGAAAGGAACTGTGCTGCAGAGTGCAGCACCAGAAAGGCCTGATACTGGCCATCTTCCTCCAGCTTTTGATGATGTTATCCATGTCATACGCCATAGTAGTTACCGCGTTGGCAGTGATCAGCCAGTAAAGGAATCTGTGGAGATGGGAGTTCAAAATGTAGATGTTGGTAAGTTTATCAATGTTGTGAGGGATGATTTAGAAATGAGGAACATAACGTCACCTTTGACTCTCAAATCTTCAAGTTGCTCTGATGTTACAAGCTTGAAATCTGACCAGTTGGAAACGAAAAACTTAAACACTCCTCCCATCCTTAAATCTTCAAGTTTCTCAGATTCTTCCAGCATGAAATCAAGCAATTCTGATCATCCTGGTCTTAAGGAGCAAGATGTGAGTAACCCTCCTCCTCAAGTTTCAGAACCTGAATCTACTGAGCTCAGTAAAAGTAACACTCCTAGGAATGAAGAGAAACCACCAGCAAAGGAAACATTGGATGTGAAATCTTTCAGACAGAGAGCAGAGGCACTTGAAGAACTCTTGGAGTTGTCTGCAGAGTTGCTGCAGCAAAACAGATTGGAGGAACTTCAAGTTGTTCTGAAGCCCTTTGGAAAAGATAAGGTCTCCCCAAGGGAGACAGCCATATGGTTAGCCAAGAGTCTCAAAGGAATGATGTCTGAGGAAAGTGGGGGACGCTCTTCATAA 3102 0.4252 MESRMDQYEIMEQIGRGAFGAAILVHHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKLNGAYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEVLKHPYLQPYVDQYRPAFSPPSTCSEKSISTVNYPRKNMAESQNSNSSNSDKDSSMSNEKSIATAVPKCDNKATEMDQTSLDDDGSEEESGSRNANDNTKTAEQEVMKPSHNAHHSPVESKQPKTIRNIMMALKEGKVREATSPMRGNRVKPGGVSTQKISTETLSKLPKPIFIAPIVKPMVESPTVALARATPDSAKRMQGSHQSKQQFLMVEASPKLKSRHDLTPPPAVVKQVDGDVVPPRPRQRTPPSLLRRPSFSGRMRLAGIDVPNAPNDTGKLGTDKIVQEHEMSPSQLADDNVPPSISGQVTREPQKVFERSSRGMQTDSSNSASSSVSFRGELADDATTFIDMKEQMLPVHSNVSHIGGVESCSDSSPLTTCTHCKVVENVPEDSCEIAMNFHNTISSNEKVNSSLSQDQHVEDSKVALVSERGLLKSQPTMSTTSGCDDGSVDPSAGATNEIKDFQDITKEMPLAKSTKHASPSSEEKSVHTEVSPESETEILIQPALGCKSPGDDKFTVRERLSPVVETVPLVTPTKLSSQKVLQEKGTVLQSAAPERPDTGHLPPAFDDVIHVIRHSSYRVGSDQPVKESVEMGVQNVDVGKFINVVRDDLEMRNITSPLTLKSSSCSDVTSLKSDQLETKNLNTPPILKSSSFSDSSSMKSSNSDHPGLKEQDVSNPPPQVSEPESTELSKSNTPRNEEKPPAKETLDVKSFRQRAEALEELLELSAELLQQNRLEELQVVLKPFGKDKVSPRETAIWLAKSLKGMMSEESGGRSS* 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0897 1033 MobiDBLite consensus disorder prediction 894 948 - -
Vra2g0897 1033 MobiDBLite consensus disorder prediction 362 376 - -
Vra2g0897 1033 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Vra2g0897 1033 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Vra2g0897 1033 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0897 1033 MobiDBLite consensus disorder prediction 273 319 - -
Vra2g0897 1033 MobiDBLite consensus disorder prediction 546 591 - -
Vra2g0897 1033 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 1016 - -
Vra2g0897 1033 CDD STKc_Nek 7 262 - -
Vra2g0897 1033 MobiDBLite consensus disorder prediction 729 764 - -
Vra2g0897 1033 SUPERFAMILY Protein kinase-like (PK-like) 4 263 IPR011009 -
Vra2g0897 1033 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Vra2g0897 1033 MobiDBLite consensus disorder prediction 691 712 - -
Vra2g0897 1033 Gene3D Transferase(Phosphotransferase) domain 1 90 363 - -
Vra2g0897 1033 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0897 1033 MobiDBLite consensus disorder prediction 475 512 - -
Vra2g0897 1033 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 1 1016 - -
Vra2g0897 1033 MobiDBLite consensus disorder prediction 949 966 - -
Vra2g0897 1033 MobiDBLite consensus disorder prediction 273 378 - -
Vra2g0897 1033 Coils Coil 970 996 - -
Vra2g0897 1033 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0897 1033 MobiDBLite consensus disorder prediction 547 591 - -
Vra2g0897 1033 MobiDBLite consensus disorder prediction 894 966 - -
Vra2g0897 1033 MobiDBLite consensus disorder prediction 735 749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0897 Vra-Chr2 8896320 8904749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0897 14 263 MAP Kinase Kinase Kinase AT1G53570 31.765 8.47e-37 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vra2g0897 Pkinase 7.9e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0897 K08857 - gmx:100818747 1607.81