Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0891 ATGGCGACGTACTTTCATGGTAGCACTTCAGAAATCCCTTCCTCCGCTGAAGGGTTGCAGACACTTTACCTTATGAATCCAAACTACGTACCGTACTCTGACGCGGCGCAACACCCAGCGCAAAACATGCTCCTCGTCAATCCCAATAGCGCCAGTAACACTAGCCCCACTTCCGCCAACGCGCTCAACTTGGGTAACTTCACCCACGCGCCTCCACCGCCATCTCCCAACAACCACCGTGACCAACAACACAACCACCACCACCACCACCTGATTGGGCTTACCATTCCCTCGTCAAACATCATCGGATCCAATACCGCCGCCGGAGATCACGCTCGCCCATCGTTCCTTGGACAACATGAATTCTCCGGCTTTCACAGCGGTGCTGCTGCGGCAACAACAGCATCAACTTCTCGTTCTAACTATAACTTATGGGGTTCCATATTCGATCAATCTGCTTCGAATATGGTGACAACAACAAACACCCCATCTGAAAATATAGGGTGTGTTGCTTCCACTGTCAATCCATCGACCCAGATTGGTTTCCACAGGCCGAATCATTTGTCGCTAAGCCTTTCTTCACAACAAACACCTTACAGGTCTCTATCCGGGGACGTTCATGCTATATCACCGGCGAGCCTCGGCGGCGATGATATGAGGGGTTTGCAGAACGGGGTTTCTAACATGCATAGTGTTGTTTTGGGTTCCAAGTATTTGAAATCAACACAGGAGCTTCTTGACGAAGTTGTGAATGTGGGGAGGGGAATCTCGAAAGGGGAGGAATCTATGGAAGGGGCTAAGAAAGAGAAGATGAAGGGGAATATTGAATCAACTTCTGGGGTTGGTGAAGGTTCGAGCTGTGGAGGAGAGAACAATGATGGAGGGAAACAAGGAGGTGAGCTCGGCACGGCACAGAGACAAGAGCTTCAGATGAAGAAATCCAAGCTTGTGAGCATGCTCGATGAGGTGGAGCAAAGGTACCGACAGTATCACCACCAAATGCAAATTGTGGTAACATCATTTGAGCAGGCTGCGGGTGTTGGAGCGGCAAAGTCTTATACATCCCTTGCGTTAAGGACAATCTCAAAGCAATTTCGGTGTCTGAAAGATGCTATCTCTTCGCAAATCAAGACAGCCAGCAAGACCTTGGGTGAAGATGATTGCTTAGGAGTTAAGGTAGAAGGTTCAAGACTTAGGTATGTTGATCATCAACTGAGACAACAACGTGCGTTGCAGCAACTAGGAATGATCCAACACAATGCTTGGAGGCCCCAAAGAGGCTTGCCTGAACGTGCTGTTTCTGTTCTTCGTGCTTGGCTTTTTGAGCATTTCCTGCACCCCTATCCTAAGGACTCCGACAAGGTTATGCTTGCAAAACAAACAGGACTTACTCGGAGCCAGGTGTCTAACTGGTTTATAAATGCTCGAGTTCGGCTATGGAAGCCAATGGTTGAAGAAATGTACTTGGAGGAGGTGAAGCAGGAACCGAACAATGGCTCCCAAGACAATAACATAAATAGATCAAAAGAAAACAACAAGGAGTTATGGTCAGAAACTAATGCTGCTACACAAGAATCTGGTGGCATGAGACTTAATCAAATTAATGTTCTCCAATCAAAGACAGAAAGTTTCAACAATAACCAAACCACTTCCCCAACAGAGATCTCCAATTCTAATTCACTCTCAACATCTCCAATGGGAGGTGGAGGAGGAGGAGGAGGAGGAGGGTCTCTCCAATCTGGTTTCCATCTCGGGGACATGCAAAGTCCAAACAAACCAAGAAGCACTTCTGAAATGCAAAACTCTCCTGGTAGTATCCTTTCAGTGGACATGGAAATGAAGCCTCATCATGGAGAGACAAACACCAGAGAAGGAACCAACACAAAGTTTGGCATTGAAAACCATGGAGGGGGTTTTGGAGCATTTCCCATGGAAGATATTGGAAGGTTCCATCATGTCACTGAACAACTGGCTCCAAGGTTTCATGGAAACGGAGTTTCTCTCACTCTTGGACTTCCACACAGTGAGAATCTTACCCTCTCGGGAACTCAGCATGGATTCCTCTCTCCGAATATGCATTTGGGAATGAGAACAACCAATGAAAATGAGTTTTGTGGTGCCATGAACACCCCACCTTCTTCTCATTCAGCGACCAGTTATGATAACATCGACATCCAAAACAGAAAGAGGTTCGCTGCGCAGTTGTTGCGGGATTTCGTGGCCTGA 2226 0.4735 MATYFHGSTSEIPSSAEGLQTLYLMNPNYVPYSDAAQHPAQNMLLVNPNSASNTSPTSANALNLGNFTHAPPPPSPNNHRDQQHNHHHHHLIGLTIPSSNIIGSNTAAGDHARPSFLGQHEFSGFHSGAAAATTASTSRSNYNLWGSIFDQSASNMVTTTNTPSENIGCVASTVNPSTQIGFHRPNHLSLSLSSQQTPYRSLSGDVHAISPASLGGDDMRGLQNGVSNMHSVVLGSKYLKSTQELLDEVVNVGRGISKGEESMEGAKKEKMKGNIESTSGVGEGSSCGGENNDGGKQGGELGTAQRQELQMKKSKLVSMLDEVEQRYRQYHHQMQIVVTSFEQAAGVGAAKSYTSLALRTISKQFRCLKDAISSQIKTASKTLGEDDCLGVKVEGSRLRYVDHQLRQQRALQQLGMIQHNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEVKQEPNNGSQDNNINRSKENNKELWSETNAATQESGGMRLNQINVLQSKTESFNNNQTTSPTEISNSNSLSTSPMGGGGGGGGGGSLQSGFHLGDMQSPNKPRSTSEMQNSPGSILSVDMEMKPHHGETNTREGTNTKFGIENHGGGFGAFPMEDIGRFHHVTEQLAPRFHGNGVSLTLGLPHSENLTLSGTQHGFLSPNMHLGMRTTNENEFCGAMNTPPSSHSATSYDNIDIQNRKRFAAQLLRDFVA* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0891 741 MobiDBLite consensus disorder prediction 260 300 - -
Vra2g0891 741 MobiDBLite consensus disorder prediction 278 292 - -
Vra2g0891 741 MobiDBLite consensus disorder prediction 544 566 - -
Vra2g0891 741 ProSiteProfiles 'Homeobox' domain profile. 419 482 IPR001356 GO:0003677
Vra2g0891 741 SUPERFAMILY Homeodomain-like 423 488 IPR009057 -
Vra2g0891 741 MobiDBLite consensus disorder prediction 66 88 - -
Vra2g0891 741 SMART prehox3 227 374 IPR006563 -
Vra2g0891 741 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 7 693 - -
Vra2g0891 741 MobiDBLite consensus disorder prediction 582 604 - -
Vra2g0891 741 SMART HOX_1 422 486 IPR001356 GO:0003677
Vra2g0891 741 MobiDBLite consensus disorder prediction 515 530 - -
Vra2g0891 741 CDD homeodomain 422 483 IPR001356 GO:0003677
Vra2g0891 741 Coils Coil 306 326 - -
Vra2g0891 741 MobiDBLite consensus disorder prediction 492 530 - -
Vra2g0891 741 MobiDBLite consensus disorder prediction 544 604 - -
Vra2g0891 741 Pfam Associated with HOX 232 373 IPR006563 -
Vra2g0891 741 MobiDBLite consensus disorder prediction 260 274 - -
Vra2g0891 741 Pfam Homeobox KN domain 439 478 IPR008422 GO:0003677|GO:0006355
Vra2g0891 741 Gene3D - 425 505 - -
Vra2g0891 741 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 7 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0891 Vra-Chr2 8726365 8731051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0891 216 741 Homeobox Transcription Factor Family AT2G35940 46.235 3.92e-125 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vra2g0891 POX 7e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0891 - - gmx:100786883 1146.34