Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0889 ATGGCAGAAATTGAAATCCCTCAGTATTTTGTTTGTCCCATTTCGTTTCAGATCATGGAAGATCCTGTGACTACTGTGACAGGGATTACATATGACAGAGAAAGCATAGAAGAGTGGTTGCGTAAGGCCAACGATTGTGTGTGTCCTGTTACCAAACAACCACTTCCAAGAAGCTCTCAATACTTAACCCCTAACCACACACTTCGGAGGCTTATCCAAGCTTGGTGTTCGGAAAACACGGCCAATGGTGTTGATCGAATTCCAACCCCGAAAACCCCTTTAAGCATGATCCAAGTTCAGAAGCTTCTGAAGGGTCTTGAGGCTCCTCATTCTTTTGGAACATCGTTGGAGAAGTTGCATGCTTTGGCTACACAAAGCCAGAGGAACAGAACCTGCATGGCTGAGGCTGGTGTAGCCAAGGTCATGGTCAAACTGATTAACAACAATTTCAAAGATGGAAACACAAACGCCAGTTCCGTTGAAGAAGCTTTGAGAATTGTTCATCTGCTTTGGAACAACCACAGCAGCATGAAACCTCTAGTTGGGGAGAGCTTGGACTTCATCAACTCGTTGACTTGGGTTTTGAAGGTTCATTTGGATGACAGCAACAGCAACATGGTAAACGAAGCAATGCCCCTTTTGAAGTTGACAATCGAGGTTGCTGATTCAACCCTTTTGGGAAATTTAAGCTTTGAATTCTTCAAGGAAATGGTGAGAGTATTGAAGAAAATAGAAGTATCTCAGAAAAGTATCAAATCTGCTTTGCATGTGCTTGTACAAACCAGCGTTTTGGGTAGAAACAGGACGAGGATTGTTGAAGCAGGTGCAGTGACAGAACTCATAGAGCTTGAGCTTGAGAAGCCAGAGAAGAACATGACAGAGCTAATATTCAACATTTTGGCTCATCTGTGTTCTTGTGCTGACGGAAGAGAACAGTTTCTTAGACATGCTGCCGGCATTGCAGTTGTTTCAAAGAGGGTTTTGAGGGTTTCTGCTGCCACTGATGAGAGAGCAATTCATGTGTTTTCAGTGATTGCTAAGTTTTCAGCATCAAACGAGGTTGTTCTAGAGATGCTGAGGGTTGGAGCTGTGTCAAAGCTTTGCATGGTGATGCAAGCGGATTGTGGTGCTTATTTGAAAGAGAAAGCAAGAGACATCCTCAGATTGCACTCCAAAGTTTGGAACAATTCTCCTTGTATACAGCTGTATTTGTTTACTAGGCATCAAAGGTGA 1233 0.4331 MAEIEIPQYFVCPISFQIMEDPVTTVTGITYDRESIEEWLRKANDCVCPVTKQPLPRSSQYLTPNHTLRRLIQAWCSENTANGVDRIPTPKTPLSMIQVQKLLKGLEAPHSFGTSLEKLHALATQSQRNRTCMAEAGVAKVMVKLINNNFKDGNTNASSVEEALRIVHLLWNNHSSMKPLVGESLDFINSLTWVLKVHLDDSNSNMVNEAMPLLKLTIEVADSTLLGNLSFEFFKEMVRVLKKIEVSQKSIKSALHVLVQTSVLGRNRTRIVEAGAVTELIELELEKPEKNMTELIFNILAHLCSCADGREQFLRHAAGIAVVSKRVLRVSAATDERAIHVFSVIAKFSASNEVVLEMLRVGAVSKLCMVMQADCGAYLKEKARDILRLHSKVWNNSPCIQLYLFTRHQR* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0889 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Vra2g0889 410 PANTHER WDSAM1 PROTEIN 3 407 IPR045185 GO:0061630
Vra2g0889 410 SUPERFAMILY ARM repeat 117 387 IPR016024 -
Vra2g0889 410 Gene3D - 109 393 IPR011989 -
Vra2g0889 410 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Vra2g0889 410 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Vra2g0889 410 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Vra2g0889 410 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 407 - -
Vra2g0889 410 SUPERFAMILY RING/U-box 4 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0889 Vra-Chr2 8709044 8710405 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0889 3 407 U-box Gene Family AT3G11840 41.611 3.43e-104 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0889 - - gmx:100787426 670.618