LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra2g0888	ATGGATGAAACGGAGGTTCCTGCTCTTTTCCTCTGTCCAGTTTCATTGCAGCTTATGAGAGATCCCGTGACATTGTGCACAGGAATGACATATGACAGACAAAATATAGAGAGATGGTTATTTTCATGCAAGAACAACAAAACCTGCCCTGTCACTAGGCAATCACTGTCACACACAGATCTTACTCCAAACCACACTCTCCGACGTTTGATCCAAGCTTGGTGCGACCACAATGCCTGCTTTGGACATGAAACCTTTTCATCTCCAAACCCAACCATTGATCAAACCGAGATTGTCAAACTTCTCTTAGAGGCAAAGAAGTTCCCGGAAAAACAGCTCAAGTGTCTTAGTAGGCTTCAATATATTGCTCTTGAAAGTGAAAGTAACAAAATCTGTTTGGAGTCTGCAGGGGCAATAGATTTCTTGGCTTCCACCATGATGATAAATTCAACTGGTATGAGTGAAGCAGCTATAAAAATCATGTTTCACCTAAACCCTTCTGAATCTCAGCTTAAAAACCTGATGAACAACGAAGGGATTCAGTTTGTTGAGTCTTTGCTTCATGTCTTGAAGCTTGGGAAGTTCCAATCTCGAAGTTATACAACTTTGCTATTGAAGTCAGCACTTAAGGTGGCTAGTCCAACCCAATTGAACAATGTCACCCCAGAGCTGTTTGTGGAGATAATTAGAGTGTTGAGGGATCAGATTTCACTGGAGGCTTCAAAGGCAGCTTTGAAACTTCTGGTGGAGTTGTGTTCATGGGGCAGGAACAAGATCAAAGCAGTTGAGAGTGGTGGAGTTTTAGTCATCGTTGAGCTACTTGTTGACGCGTCTGATAGGAGAGCATGTGAACTGATGTTGATAGCTTTGGAAAAACTATGTGGCTGTGCAGAAGGAAGGGCTGAATTGGTGAGCCATGGAGCTGGAATTGCTGTTGTGGCAAAGAAAATTCTGAGGGTTTCACAAGTGGCAAGTGATAGAGGGGTGAAAATTTTGACCTCCATTTGTAGGTATTCAGCCACCCCAAGAGTTCTTCATGAAATGCTGCTGTTTGGGGCAGTGTCAAAGTTGTGCTTGGTGCTTCAAGTGGAGGGTTGTTTCAAGGCCAAAGAAAGGGCAAAGGAGACACTCAAATTGCACTCTCTAGTCTGGAGGAACTCCACATGCATTCCTCTTCCATTGCTTGCATCTTATCCATGA	1200	0.435	MDETEVPALFLCPVSLQLMRDPVTLCTGMTYDRQNIERWLFSCKNNKTCPVTRQSLSHTDLTPNHTLRRLIQAWCDHNACFGHETFSSPNPTIDQTEIVKLLLEAKKFPEKQLKCLSRLQYIALESESNKICLESAGAIDFLASTMMINSTGMSEAAIKIMFHLNPSESQLKNLMNNEGIQFVESLLHVLKLGKFQSRSYTTLLLKSALKVASPTQLNNVTPELFVEIIRVLRDQISLEASKAALKLLVELCSWGRNKIKAVESGGVLVIVELLVDASDRRACELMLIALEKLCGCAEGRAELVSHGAGIAVVAKKILRVSQVASDRGVKILTSICRYSATPRVLHEMLLFGAVSKLCLVLQVEGCFKAKERAKETLKLHSLVWRNSTCIPLPLLASYP*	400

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra2g0888	399	Gene3D	-	90	385	IPR011989	-
	Vra2g0888	399	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	1	83	IPR013083	-
	Vra2g0888	399	SMART	Ubox_2	9	74	IPR003613	GO:0004842\|GO:0016567
	Vra2g0888	399	CDD	RING-Ubox_PUB	10	54	IPR045210	-
	Vra2g0888	399	SUPERFAMILY	RING/U-box	3	79	-	-
	Vra2g0888	399	PANTHER	OS11G0573500 PROTEIN	2	399	-	-
	Vra2g0888	399	Pfam	U-box domain	6	78	IPR003613	GO:0004842\|GO:0016567
	Vra2g0888	399	ProSiteProfiles	U-box domain profile.	5	81	IPR003613	GO:0004842\|GO:0016567
	Vra2g0888	399	PANTHER	WDSAM1 PROTEIN	2	399	IPR045185	GO:0061630
	Vra2g0888	399	SUPERFAMILY	ARM repeat	108	361	IPR016024	-

Showing 1 to 10 of 10 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra2g0888	Vra-Chr2	8675272	8676903	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra2g0888	2	399	U-box Gene Family	AT2G35930	50.248	4.72e-142	409

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra2g0888	-		-	var:108340160	747.658

Showing 1 to 1 of 1 entries