Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0888 ATGGATGAAACGGAGGTTCCTGCTCTTTTCCTCTGTCCAGTTTCATTGCAGCTTATGAGAGATCCCGTGACATTGTGCACAGGAATGACATATGACAGACAAAATATAGAGAGATGGTTATTTTCATGCAAGAACAACAAAACCTGCCCTGTCACTAGGCAATCACTGTCACACACAGATCTTACTCCAAACCACACTCTCCGACGTTTGATCCAAGCTTGGTGCGACCACAATGCCTGCTTTGGACATGAAACCTTTTCATCTCCAAACCCAACCATTGATCAAACCGAGATTGTCAAACTTCTCTTAGAGGCAAAGAAGTTCCCGGAAAAACAGCTCAAGTGTCTTAGTAGGCTTCAATATATTGCTCTTGAAAGTGAAAGTAACAAAATCTGTTTGGAGTCTGCAGGGGCAATAGATTTCTTGGCTTCCACCATGATGATAAATTCAACTGGTATGAGTGAAGCAGCTATAAAAATCATGTTTCACCTAAACCCTTCTGAATCTCAGCTTAAAAACCTGATGAACAACGAAGGGATTCAGTTTGTTGAGTCTTTGCTTCATGTCTTGAAGCTTGGGAAGTTCCAATCTCGAAGTTATACAACTTTGCTATTGAAGTCAGCACTTAAGGTGGCTAGTCCAACCCAATTGAACAATGTCACCCCAGAGCTGTTTGTGGAGATAATTAGAGTGTTGAGGGATCAGATTTCACTGGAGGCTTCAAAGGCAGCTTTGAAACTTCTGGTGGAGTTGTGTTCATGGGGCAGGAACAAGATCAAAGCAGTTGAGAGTGGTGGAGTTTTAGTCATCGTTGAGCTACTTGTTGACGCGTCTGATAGGAGAGCATGTGAACTGATGTTGATAGCTTTGGAAAAACTATGTGGCTGTGCAGAAGGAAGGGCTGAATTGGTGAGCCATGGAGCTGGAATTGCTGTTGTGGCAAAGAAAATTCTGAGGGTTTCACAAGTGGCAAGTGATAGAGGGGTGAAAATTTTGACCTCCATTTGTAGGTATTCAGCCACCCCAAGAGTTCTTCATGAAATGCTGCTGTTTGGGGCAGTGTCAAAGTTGTGCTTGGTGCTTCAAGTGGAGGGTTGTTTCAAGGCCAAAGAAAGGGCAAAGGAGACACTCAAATTGCACTCTCTAGTCTGGAGGAACTCCACATGCATTCCTCTTCCATTGCTTGCATCTTATCCATGA 1200 0.435 MDETEVPALFLCPVSLQLMRDPVTLCTGMTYDRQNIERWLFSCKNNKTCPVTRQSLSHTDLTPNHTLRRLIQAWCDHNACFGHETFSSPNPTIDQTEIVKLLLEAKKFPEKQLKCLSRLQYIALESESNKICLESAGAIDFLASTMMINSTGMSEAAIKIMFHLNPSESQLKNLMNNEGIQFVESLLHVLKLGKFQSRSYTTLLLKSALKVASPTQLNNVTPELFVEIIRVLRDQISLEASKAALKLLVELCSWGRNKIKAVESGGVLVIVELLVDASDRRACELMLIALEKLCGCAEGRAELVSHGAGIAVVAKKILRVSQVASDRGVKILTSICRYSATPRVLHEMLLFGAVSKLCLVLQVEGCFKAKERAKETLKLHSLVWRNSTCIPLPLLASYP* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0888 399 Gene3D - 90 385 IPR011989 -
Vra2g0888 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Vra2g0888 399 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Vra2g0888 399 CDD RING-Ubox_PUB 10 54 IPR045210 -
Vra2g0888 399 SUPERFAMILY RING/U-box 3 79 - -
Vra2g0888 399 PANTHER OS11G0573500 PROTEIN 2 399 - -
Vra2g0888 399 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Vra2g0888 399 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Vra2g0888 399 PANTHER WDSAM1 PROTEIN 2 399 IPR045185 GO:0061630
Vra2g0888 399 SUPERFAMILY ARM repeat 108 361 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0888 Vra-Chr2 8675272 8676903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0888 2 399 U-box Gene Family AT2G35930 50.248 4.72e-142 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0888 - - var:108340160 747.658