Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0885 ATGGACGTTGATTCCTCGATGTTGCCGGAGGCCGATCACGATTCGCCGGTGCAGAACCATGCTGAGAGAGACCAGTTAAAAGAGTCACAGCCTCCTCCGTCGCCGCCGCCTTTGTCGACGGCAGGTGGATCTCAGGCTCAGTCGCCGTCGCAACAGCAGCCTTCGTCGCCGGTGGCGGGGGGTCAGGTGCAGCATAGTCCGGTGGTTGGTCCGAGACTCGCGCCAACTTACTCAGTGGTTAATGCTATTTTGGAGAAGAAGGAGGATGGGCCGGGACCGCGGTGCGGCCACACGTTGACGGCGGTGGCGGCGGTCGGAGAGGAGGGGACGCCGGGGTACATTGGGCCGAGGCTGATTTTGTTCGGCGGTGCCACTGAGCTTGAAGGGAATTCTGCGGCGTCAGGGACTCCTTCATCCGCTGGAAATGCTGGCATACGTTTATCTGGTGCCACTGCTGATGTCCACTGTTATGATGTCATAACTAATAAATGGTCTAGGATAACTCCCATTGGTGAACCGCCAACACCTAGGGCTGCACATGTGGCAACTGCTGTAGGAACTATGGTAGTTATTCAGGGTGGCATTGGTCCTGCTGGTTTGTTTGCTGAGGATCTTCATGTTCTTGATCTCACTCAGCAACGACCACGATGGCATAGAGTTGGTGTTCCTGGCCCTGGACCAGGACCACGCTATGGACATGTTATGGCTTTGGTGGGGCAGAGGTATCTCATGGTAATTGGAGGCAATGATGGAAAGAGACCTTTGGCTGATGTATGGGCTTTGGACACAGCTGCCAAGCCTTATGAGTGGCGCAAGTTGGAGCCAGAAGGAGAGGGTCCACCTCCATGCATGTATGCAACTGCCAGTGCACGATCTGATGGGCTTCTTCTGCTTTGTGGAGGGAGGGATGCCAATAGTGCTCCATTGGCAAGTGCATATGGACTTGCTAAGCATAGAGATGGTCGTTGGGAATGGGCCATTGCTCCTGGTGTCTCACCATCTCCAAGATATCAACATGCAGCGGTATTTGTCAATGCAAGGCTTCATGTGTTTGGTGGGGCTCTTGGGGGAGGACAGATGGTTGAAGATTCATCAAGTGTTGCAGTTTTGGACACCGCCGCTGGTGTTTGGTGTGATACAAAATCTGTTGTTACCAGTCCAAGAACAGGTAGATACAGTGCTGATGCTGCTGGTGGAGATGCATCAGTTGAGTTGACACGGCGTTGTAGGCATGCTGCTGCTGCTATTGGTGACCTGATTTTTATCTATGGTGGTTTGCGTGGGGGGGTCTTGCTGGACGATCTACTTGTTGCTGAAGATCTTGCTGCTGCTGAAACAACAGCTGCTGCTTCACATGCAGCAGCTGCAGCTGCATCTAATGTACAAGCTGGACGACTACCTGGACGATATGGTGGATTTGTTGATGATAGGGCAAGGCAAACCATGATTGAAGCAACTCCAGATGGTGCTGTTGTTTTGGGAAATCCAGTTGCCCCCCCTGTAAATGGGGACATACATACTGATATCAGCACTGAAAATGCATTACTCCCAGGATCTAGGCGAACAAGCAAAGGAGTTGAATATCTAGTTGAAGCATCAGCTGCAGAAGCTGAAGCTATCAGTGCCACACTGGCTGCTGCCAAAGCACGGCAAGTAAATGGGGAAGTTGAATTGCCTGACCGAGATCGTGGGGCTGAGGCAACACCTAGTGGGAAACAAATATATTCCTTGATTAAGCCTGATTCTTCTGCGTCAAATAGCATTCCTCCTGGTGGAGTGAGGCTGCATCACAGAGCTGTGGTTGTTGCTGCAGAGACTGGTGGTGCATTAGGTGGCATGGTTAGACAGCTTTCAATTGATCAGTTTGAGAATGAAGGCAGGCGAGTCAGTTATGGGACTCCTGAAAGTGCAACAGCTGCTAGGAAGTTATTAGATCGGCAGATGTCTATCAATAGTGTACCAAAGAAGGTTGTAGCTCACCTCTTAAAGCCACGAGGTTGGAAACCGCCTGTACGGCGACAGTTTTTCTTGGACTGCAATGAAATTGCGGATCTTTGTGATAGTGCAGAACGAATATTTTCAAGTGAACCAAGCGTGATACAGCTTAGGGCTCCAATTAAAATATTTGGTGATTTACATGGGCAGTTCGGAGATCTCATGCGCCTCTTTGATGAGTATGGCTCACCATCCACGGCTGGTGACATAGCATACATCGACTATCTATTCCTTGGAGATTATGTTGATAGGGGTCAACACAGCCTGGAAACTATTAGCCTTCTGCTTGCTCTGAAGGTTGAGTATCCAAACAACGTACATTTAATACGTGGAAACCATGAAGCTGCAGATATTAATGCCCTTTTTGGATTCCGAATAGAGTGCATCGAGAGGATGGGTGAGAGAGATGGAATTTGGGCATGGCACCGTATAAACCGACTGTTTAATTGGCTTCCGCTGGCAGCACTAATTGAGAAAAAAATTATTTGCATGCATGGGGGTATTGGTCGTTCAATAAATCACGTTGAACAAATTGAGAATATTCAGCGTCCAATTACGATGGAAGCAGGATCAATCGTGCTTATGGATCTATTGTGGTCTGATCCTACAGAGAATGACAGTGTGGAAGGGCTGCGGCCAAATGCTCGGGGTCCAGGATTAGTTACTTTTGGGCCTGATCGGGTCATGGAATTTTGCAACAACAACGATCTTCAGCTGATTGTTCGGGCTCATGAATGTGTGATGGATGGCTTTGAGCGATTTGCTCAGGGACATTTGATCACACTTTTTTCTGCGACAAACTACTGTGGTACGGCAAATAATGCTGGGGCGATTTTAGTTTTAGGAAGAGATCTTGTTGTGGTTCCTAAATTGATTCATCCATTACCACCTGCAATTTCTTCACCGGAAACTTCGCCAGAGCGACACATTGAGGATACATGGATGCAGGAGTTGAATGCCAACAGACCACCAACACCAACTAGAGGCCGTCCTCAAGTAACAAATGACCGAGGTTCTCTTGCTTGGATATAG 3027 0.4912 MDVDSSMLPEADHDSPVQNHAERDQLKESQPPPSPPPLSTAGGSQAQSPSQQQPSSPVAGGQVQHSPVVGPRLAPTYSVVNAILEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATELEGNSAASGTPSSAGNAGIRLSGATADVHCYDVITNKWSRITPIGEPPTPRAAHVATAVGTMVVIQGGIGPAGLFAEDLHVLDLTQQRPRWHRVGVPGPGPGPRYGHVMALVGQRYLMVIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDANSAPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVFGGALGGGQMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDASVELTRRCRHAAAAIGDLIFIYGGLRGGVLLDDLLVAEDLAAAETTAAASHAAAAAASNVQAGRLPGRYGGFVDDRARQTMIEATPDGAVVLGNPVAPPVNGDIHTDISTENALLPGSRRTSKGVEYLVEASAAEAEAISATLAAAKARQVNGEVELPDRDRGAEATPSGKQIYSLIKPDSSASNSIPPGGVRLHHRAVVVAAETGGALGGMVRQLSIDQFENEGRRVSYGTPESATAARKLLDRQMSINSVPKKVVAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPSVIQLRAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETISLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENIQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAISSPETSPERHIEDTWMQELNANRPPTPTRGRPQVTNDRGSLAWI* 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0885 1008 PIRSF STPPP_BSU1 33 1008 IPR012391 GO:0004721|GO:0009742
Vra2g0885 1008 ProSitePatterns Serine/threonine specific protein phosphatases signature. 774 779 IPR006186 GO:0016787
Vra2g0885 1008 Pfam Calcineurin-like phosphoesterase 705 912 IPR004843 GO:0016787
Vra2g0885 1008 SUPERFAMILY Metallo-dependent phosphatases 663 968 IPR029052 -
Vra2g0885 1008 SUPERFAMILY Kelch motif 146 438 IPR015915 GO:0005515
Vra2g0885 1008 Gene3D - 641 980 IPR029052 -
Vra2g0885 1008 MobiDBLite consensus disorder prediction 1 70 - -
Vra2g0885 1008 MobiDBLite consensus disorder prediction 984 999 - -
Vra2g0885 1008 SMART pp2a_7 677 961 IPR006186 GO:0016787
Vra2g0885 1008 MobiDBLite consensus disorder prediction 984 1008 - -
Vra2g0885 1008 Pfam Kelch motif 335 381 IPR011498 GO:0005515
Vra2g0885 1008 MobiDBLite consensus disorder prediction 40 62 - -
Vra2g0885 1008 Pfam Galactose oxidase, central domain 242 290 - -
Vra2g0885 1008 Gene3D - 319 463 IPR015915 GO:0005515
Vra2g0885 1008 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 1 1008 - -
Vra2g0885 1008 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 1008 - -
Vra2g0885 1008 Gene3D - 75 197 IPR015915 GO:0005515
Vra2g0885 1008 Gene3D - 198 313 IPR015915 GO:0005515
Vra2g0885 1008 CDD MPP_Bsu1_C 657 959 IPR041758 -
Vra2g0885 1008 PRINTS Serine/threonine phosphatase family signature 705 732 IPR006186 GO:0016787
Vra2g0885 1008 PRINTS Serine/threonine phosphatase family signature 740 767 IPR006186 GO:0016787
Vra2g0885 1008 PRINTS Serine/threonine phosphatase family signature 773 797 IPR006186 GO:0016787
Vra2g0885 1008 PRINTS Serine/threonine phosphatase family signature 811 837 IPR006186 GO:0016787
Vra2g0885 1008 PRINTS Serine/threonine phosphatase family signature 841 868 IPR006186 GO:0016787
Vra2g0885 1008 PRINTS Serine/threonine phosphatase family signature 901 921 IPR006186 GO:0016787
Vra2g0885 1008 PRINTS Serine/threonine phosphatase family signature 923 939 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0885 Vra-Chr2 8607011 8627855 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0885 669 904 Calmodulin-binding Proteins AT5G63870 29.044 7.78e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0885 - - gmx:100788485 1800.41