Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0879 ATGTCAATGGAAATGATGGCAACGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATACAACAGTTTGCTAACCATAGTGACGGTTAGATGTGGACATTGTGCTAATTTGCTATCAGTTAACATGGGAGCGTCCCTTCAACCATTTCCTCCTCAAGACCCTCAGTCACAGAAACAGCACATAAGCTTTGAAGAACCAAGCAGCAAGGAACTGGGATCCTCGTCTTCAAAATGTAACAAAATAGCACCCTTTGAGGCAGTAGAGCATGAACCACCAAGGATTCCTCCCATTCGTCCTACAGAGAAGAGACATCGTGTGCCTTCTGCTTATAATCGATTCATTAAGGAGGAAATCCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCCGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGTAACAGTCAAGGAAAGTTGGAGCAGGGAGAAGGAGGTGAAAAGACCAATGGATTCTACTGA 552 0.4475 MSMEMMATERVCYVHCNFCNTILAVSVPYNSLLTIVTVRCGHCANLLSVNMGASLQPFPPQDPQSQKQHISFEEPSSKELGSSSSKCNKIAPFEAVEHEPPRIPPIRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGLKLDGNSQGKLEQGEGGEKTNGFY* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0879 183 PANTHER PLANT-SPECIFIC TRANSCRIPTION FACTOR YABBY FAMILY PROTEIN 1 183 - -
Vra2g0879 183 SUPERFAMILY HMG-box 105 153 IPR036910 -
Vra2g0879 183 Gene3D High mobility group box domain 103 155 IPR036910 -
Vra2g0879 183 Pfam YABBY protein 7 160 IPR006780 GO:0007275
Vra2g0879 183 MobiDBLite consensus disorder prediction 92 111 - -
Vra2g0879 183 MobiDBLite consensus disorder prediction 57 89 - -
Vra2g0879 183 MobiDBLite consensus disorder prediction 164 183 - -
Vra2g0879 183 PANTHER PROTEIN YABBY 6-RELATED 1 183 IPR006780 GO:0007275
Vra2g0879 183 MobiDBLite consensus disorder prediction 57 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0879 Vra-Chr2 8542691 8548884 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0879 1 183 C2C2-YABBY Transcription Factor Family AT1G08465 64.894 2.13e-82 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vra2g0879 YABBY 3.6e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0879 K25796 - gmx:100500026 320.472