Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0877 ATGAGTGATATAAGGAAGTGGTTTATGAAATCACATGACAAGGGCAACAATGCCGCTCCCTCCAAGCCTTCCAATCAATCCAAGCCTTCTTCGGATAAACCCCAGTCCGATAAAAATGTGGCTGGAGGTCAAGAAAGCTCCGGGAGGAGGGTAACTAGCAAATATTTTAACACAAACAAGCAAAAGGTGAAAGATGAGAAAGAAACGCAGGAGTTACCTGCTAAAAGAAAGAATGTGAAGGACAGTGAAGATATACCAGAGCCTAAGAAAATTCATGAAGATGTTGGAGATGATTCTGTCTTGCCCACCAATAAAAAGAAGTTAGCTGAGGCCACTCCGAAAAAAAAATTAAAGAGTGAATCAGGTAAAGGAATTCCCCAAAAATCTGCAGTTTTGGAAGAAAGTGACGAAGATGATGACAAAGATGCCGTGTCTGCTGTTAAATCTGCTGGAAGGGGTGGTGGAGGAAGGGGAGCATCTGGGCGATCAAGTGGTGGGAGAGGTAGAGGAGGTGGTAGGGGTGGATTCATGAATTTTGGAGAAAGAAAAGATCCCCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTAACTGTTTAGCTGGCTTGACTTTTGTGATTAGTGGAACGCTGGACAGTTTGGAACGTGAAGAAGCTGAAGATTTGATTAAGCGCCATGGTGGTCGAGTCACTGGATCTGTCAGCAAGAAAACGAATTATTTGCTATGTGATGAAGACATTGGGGGACGGAAGTCTGAAAAGGCCAAAGAGCTAGGAACTTCATTCCTCACGGAGGATGGATTATTTGATATGATTCGTGCATCAAAACCTGCAAAAGCTCCTTCACAGGTAGAAAAGAAACCTGTGAATAAAGCTGTTGCAGTAGCATCCCCGTCAAAAGTTTCTCCGAAATCGCAAGTAAAGGTTCCTCTGTCTTCACGATCACCTTCTAAGCAAGCTAAGCCAAAGGCTGCTACTACTGTTCAATCTTCTGTTATGTGGACAGAGAAATATCGACCTAAAGATCCAAAAGATGTCATAGGGAACCAGTCACTTATTGTTCAACTACGTAACTGGTTGAAAGCTTGGCATGAACAATTTTTGGACACTGGTAACAAAATAAAGGGTAAAAAGCAAAATGACTCTGGTTTGAAAAAAGCTGTCTTGTTAAGTGGAACCCCTGGTATAGGAAAAACAACTTCAGCAAAGTTGGTCTGTCAGGAGCTTGGTTTCCAAGCCATAGAGGTTAATGCTAGTGATAGCCGTGGAAAAGCTGATAACAAAATTGAGAAAGGAATTAGTGGAAGCAAGACAAATTCTGTTAAGGAGCTTGTAACCAATGAGTCTATTGGTGCTAATATGGAACGGTCCAAGCTTTCCAAATCTGTGCTAATTATGGACGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTTCCATCAAGATATCAAAAATTCCTATCATCTGCATTTGCAATGACCGTTACAGCCAGAAACTTAAAAGCCTTGTGAACTACTGTTTGCTTCTAAGTTTTCGGAAGCCTACAAAGCAGCAGATGGCAAAGAGGTTGATGGATGTTGCAAAGTCTGAAGGGCTTCAAGTCAATGAGATTGCTCTTGAGGAACTAGCAGAAAGAGTTAACGGAGATATGCGGATGGCAGTAAATCAGTTACAGTATATGAGCCTCTCTATGTCAATTATCAACTATGACGACATTAGACAACGCTTTCTTACCAATGCAAAGGATGAAGACATTTCACCATTCACGGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAGTTGAAAATGGATGAGAGGATAAACCTTAGCATGAGTGATCCTGATCTTGTTCCTCTTCTTATTCAGGAAAATTATATTAATTATAAACCAAGCTTGGCCGGTAAGGATGACAATGGGATAAAACGCATGAACCTAATTGCCCGAGCTGCTGAGTCTATTGCTGATGGGGATATAGTGAATGTTCAGATTCGCAGATATAGACAGTGGCAGCTCTCTCAAGCTAGTTGTACAGCAACATGCATAATTCCTGCATCATTGTTGCATGGCCAAAGAGAAATACTTGAACAGGGAGAACGCAATTTCAACCGGTTTGGTGGGTGGCTGGGGAAGAACTCGACAATGGGCAAAAACTTTAGGCTTTTGGATGATCTTCATGTTCACATTCTTGCTTCTCGTGAATCCAGTTCAGGAAGGGATACCATTCGAATGGAATACCTTACACTTATTCTTAAACGACTGACTGAACCCCTACGAACCCTTCCTAAGGCTGAAGCGGTTCAACAAGTTGTGGAATTCATGAATACATACTCTATCAGTCAGGAAGATTTTGATACTATAGTAGAGTTATCAAAATTCAAGGGTCAGCCTAATCCACTAGACGGGATCCAGCCTGCCGTTAAGTCAGCTTTGACAAAAGCCTACAAAGAGCAAAGCAGATCTCGGGTGGTTCGAGTTGCCGACCAAATCACACTTCCTGGTGTAAAGAAGGCCCCTAAGAAGCGGATTGCTGCTATTCTTGAACCAGCCGAGGAAGGAGGCAAAAATGAAGATGACACCTTTGACGAGAGTGAAGAAGAGAACACCTCTGACACAGAAGAGTTGGGCATCACCAAGGGTGAGAAGCTGCAATCAGAACTTCAAAGCTTGAATTCAAAAGCCACGCAAGTACAGTTGGAACTGAAGGGAACGGGTAATTCGAGTTCCAAGAAGGCATCGGCTGGTAGAGGAAAAGGTGCTTCCGCATCTGGGAAGAAGGTTGCTCAAGCTCCAAAAAGAAAAAGGTGA 2832 0.429 MSDIRKWFMKSHDKGNNAAPSKPSNQSKPSSDKPQSDKNVAGGQESSGRRVTSKYFNTNKQKVKDEKETQELPAKRKNVKDSEDIPEPKKIHEDVGDDSVLPTNKKKLAEATPKKKLKSESGKGIPQKSAVLEESDEDDDKDAVSAVKSAGRGGGGRGASGRSSGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPNCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSEKAKELGTSFLTEDGLFDMIRASKPAKAPSQVEKKPVNKAVAVASPSKVSPKSQVKVPLSSRSPSKQAKPKAATTVQSSVMWTEKYRPKDPKDVIGNQSLIVQLRNWLKAWHEQFLDTGNKIKGKKQNDSGLKKAVLLSGTPGIGKTTSAKLVCQELGFQAIEVNASDSRGKADNKIEKGISGSKTNSVKELVTNESIGANMERSKLSKSVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMDVAKSEGLQVNEIALEELAERVNGDMRMAVNQLQYMSLSMSIINYDDIRQRFLTNAKDEDISPFTAVDKLFGFNAGKLKMDERINLSMSDPDLVPLLIQENYINYKPSLAGKDDNGIKRMNLIARAAESIADGDIVNVQIRRYRQWQLSQASCTATCIIPASLLHGQREILEQGERNFNRFGGWLGKNSTMGKNFRLLDDLHVHILASRESSSGRDTIRMEYLTLILKRLTEPLRTLPKAEAVQQVVEFMNTYSISQEDFDTIVELSKFKGQPNPLDGIQPAVKSALTKAYKEQSRSRVVRVADQITLPGVKKAPKKRIAAILEPAEEGGKNEDDTFDESEEENTSDTEELGITKGEKLQSELQSLNSKATQVQLELKGTGNSSSKKASAGRGKGASASGKKVAQAPKRKR* 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0877 943 MobiDBLite consensus disorder prediction 890 922 - -
Vra2g0877 943 MobiDBLite consensus disorder prediction 17 58 - -
Vra2g0877 943 CDD HLD_clamp_RFC 522 580 - -
Vra2g0877 943 Pfam Replication factor RFC1 C terminal domain 662 824 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Vra2g0877 943 SMART BRCT_7 198 276 IPR001357 -
Vra2g0877 943 MobiDBLite consensus disorder prediction 59 122 - -
Vra2g0877 943 CDD BRCT_RFC1 196 274 - -
Vra2g0877 943 MobiDBLite consensus disorder prediction 854 943 - -
Vra2g0877 943 Pfam ATPase family associated with various cellular activities (AAA) 389 488 IPR003959 GO:0005524|GO:0016887
Vra2g0877 943 Coils Coil 888 908 - -
Vra2g0877 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 582 IPR027417 -
Vra2g0877 943 PANTHER REPLICATION FACTOR C SUBUNIT 1 10 920 - -
Vra2g0877 943 Gene3D BRCT domain 173 275 IPR036420 -
Vra2g0877 943 CDD AAA 386 485 - -
Vra2g0877 943 Pfam BRCA1 C Terminus (BRCT) domain 198 273 IPR001357 -
Vra2g0877 943 SMART AAA_5 385 523 IPR003593 -
Vra2g0877 943 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 10 920 - -
Vra2g0877 943 ProSiteProfiles BRCT domain profile. 196 277 IPR001357 -
Vra2g0877 943 Gene3D - 594 703 - -
Vra2g0877 943 SUPERFAMILY BRCT domain 196 277 IPR036420 -
Vra2g0877 943 MobiDBLite consensus disorder prediction 1 197 - -
Vra2g0877 943 MobiDBLite consensus disorder prediction 300 327 - -
Vra2g0877 943 Gene3D - 522 592 - -
Vra2g0877 943 SUPERFAMILY post-AAA+ oligomerization domain-like 593 738 IPR008921 GO:0003677|GO:0006260
Vra2g0877 943 MobiDBLite consensus disorder prediction 180 194 - -
Vra2g0877 943 MobiDBLite consensus disorder prediction 863 879 - -
Vra2g0877 943 Gene3D - 333 521 IPR027417 -
Vra2g0877 943 Coils Coil 943 943 - -
Vra2g0877 943 PIRSF RFC1 1 923 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Vra2g0877 943 MobiDBLite consensus disorder prediction 296 327 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0877 1 903 Core DNA Replication Machinery Family AT5G22010 67.974 0.0 1129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0877 K10754 - gmx:100790070 1513.82