Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0873 ATGTTCAACGGCATGATGGATCCCGATTTGATTAGAATCGCTCAGGAGCAGATGAGTCGCATGTCACCTGCTGAGTTGGCTCGGATCCAACAACAGATGATGTCTAATCCAGAGCTGATGAGGATGGCCTCGGAGAGCATGAAGAACATGAGTTCTGAAGACTTTAAACTTGCTGCTGAGCAGCTAAAGCATACTCGTCCAGAAGAAATGGCTGAGATTGGTGAAAAGATGGCCAATGCGTCTCCTGATGAAGTGGCGGCAATGCGATCCCGGGTTGATGCCCAGATCAAATATCAGTTGAGTGCAGCTGAGATGTTGAAGAAGCAGGGCAATGAACTTCATAGTCAAGGAAAGTTCAGTGAAGCTTTGAAGAAGTATACGCTTGCTAAAGAAAACATCAAAGAGATTCCATCTTTCCAAAGTAGAAAGCTTCTTTTGGCATGTTCTCTCAACTTGATGTCCTGTTACTTGAAGACAAGGCAGTATAATGAGTGCATAAAAGAAGGTTCTGAGGTTTTGGCATATGACGCAACGAACCTTAAGGCTCTTTATCGAAGAGGTCAAGCATATAAGGAACTAGGTCGACTAAATGATGCTGTTTCTGATCTGAGCAAGGCGCAGGAAGTGTCCCCTGATGATGATACAGTTGCAGAGCTTTTACGGGATACCAAGGAAAAATTGACAATGGGAGGTGGTGAGCAATTGACAAGTGGACTAGTAATCGAAGAAATAACTGAAGAAGTCGAGGATGTACCACCTAAAAGCTCTTTGGAACAAACAGCCCTTCAAAAAAAATCTGGTGACACCTCTAAGAGTACAAGTACAGCTAACAATAGAAATTCAAAATCAAATGCAGACAGCTTAGATGCACTGAGAAAGGATCCTGAAGCTGTCAGGTCATTCCAGAACTTCATTCAAAACACAAATCCTGCCACGCTGGCTTCTTTGAATGCTGGACAATTCAAAGATGTGTCCCCAGATATGATCAAAACCACCTCTGATGTAATTAGTAAGATGTCACCTGATGAACTGCAAAAAATGCTTGATATGGCTTCTTCATTTCAAGGGGACAACCAATTTTTAAGAGGAGGTCCCCCTGATTCTTTTAACCCAGGATCAATGCCTCCCAATGTGACACCTGACATGTTTAAAGCAGCAAGTGATATGATAAGTAAAATGCCAGCTGATGACCTCAAGAAGATGTTTGAAATGGCATCATCACTAAAAGGGAAAGAATCTATTCCATCCGCAGCAGCAGTAGACGAGATCCAAAGAAATGTTCATCAGTCAAACATCCCATCATCAAGTACTAGTGAAACTAGTCATTTTGGGGAATCAAGTTCTTCTCATAATGTGTTTTCAAATATGAGAAGCGCTTCTCAGTCAAACTTTCCTTCTTCCAGTCCTGATCTACAAGAGCAGATGAGAAACCAGATGAAAGATCCAGCCATGCGGCAGATGTTCACATCCATGATTAAAAATATGAGCCCGGAAATGATGGCAAACATGGGTGAACAATTTGGTGTTAAGCTTTCACCAGAAGAGGCAGCAAAAGCTCAGAAAGCTGTCTCATCCATGTCACCAGAGAGCTTGGATAAAATGATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCAAGAAAGACAAAGAACTGGCTGCTAGGGAAGCCTGGGATGATCTTTGCAATATGCATGCTCATTTTGGCTATCATTCTTCACCGGTTAGGCTTCATTGGTGGCTAG 1749 0.4265 MFNGMMDPDLIRIAQEQMSRMSPAELARIQQQMMSNPELMRMASESMKNMSSEDFKLAAEQLKHTRPEEMAEIGEKMANASPDEVAAMRSRVDAQIKYQLSAAEMLKKQGNELHSQGKFSEALKKYTLAKENIKEIPSFQSRKLLLACSLNLMSCYLKTRQYNECIKEGSEVLAYDATNLKALYRRGQAYKELGRLNDAVSDLSKAQEVSPDDDTVAELLRDTKEKLTMGGGEQLTSGLVIEEITEEVEDVPPKSSLEQTALQKKSGDTSKSTSTANNRNSKSNADSLDALRKDPEAVRSFQNFIQNTNPATLASLNAGQFKDVSPDMIKTTSDVISKMSPDELQKMLDMASSFQGDNQFLRGGPPDSFNPGSMPPNVTPDMFKAASDMISKMPADDLKKMFEMASSLKGKESIPSAAAVDEIQRNVHQSNIPSSSTSETSHFGESSSSHNVFSNMRSASQSNFPSSSPDLQEQMRNQMKDPAMRQMFTSMIKNMSPEMMANMGEQFGVKLSPEEAAKAQKAVSSMSPESLDKMMLWADRIQRGVESARKTKNWLLGKPGMIFAICMLILAIILHRLGFIGG* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0873 582 MobiDBLite consensus disorder prediction 256 285 - -
Vra2g0873 582 SUPERFAMILY TPR-like 96 225 IPR011990 GO:0005515
Vra2g0873 582 SMART tpr_5 146 179 IPR019734 GO:0005515
Vra2g0873 582 SMART tpr_5 103 136 IPR019734 GO:0005515
Vra2g0873 582 SMART tpr_5 180 213 IPR019734 GO:0005515
Vra2g0873 582 MobiDBLite consensus disorder prediction 250 289 - -
Vra2g0873 582 Gene3D Tetratricopeptide repeat domain 89 230 IPR011990 GO:0005515
Vra2g0873 582 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Vra2g0873 582 ProSiteProfiles TPR repeat region circular profile. 180 213 - -
Vra2g0873 582 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 58 581 - -
Vra2g0873 582 MobiDBLite consensus disorder prediction 429 473 - -
Vra2g0873 582 PANTHER OUTER ENVELOPE PROTEIN 61 58 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0873 Vra-Chr2 8457544 8462810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0873 89 227 Calmodulin-binding Proteins AT3G25230 37.241 6.96e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0873 - - gmx:100793234 947.192