Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0867 ATGGTTAGAGGTTGTGGACTCTCCATGGATTCAGATCCAATTGGGAGCTTCTTCCTCCACAAGCCTATTGTTCTCAATTCTTTCCCTGAAGACACAAACCACCCCAAGTGGAAACTTACTCCCCACAACAACATGGACACCATCCCCTTCCAAGTCAACCTTAGCTGTTCTCCAAACAATCATCACTCTCCCCCACCACCCCTCCACAACACAACCGAGATGGACTTCTTCTCCGACAACACCAACCACAACGTTTCTGCTTCTGCTTCTGCTTCTGCCTCTAATCATCATCATTCCACCACCCCACCTACGTTGGAATTCAAACTAAACACTGGGCTGAATCTTCTCACTACCAACACTAGCAGTGATCAATCTATGGTGGATGATGAGATATCACCCAATTCAGAAGACAGAAGAGCTGAGAATAAGCTTGCTGTTCTTCAAGCTGAGCTTGAGAGAATGAAGAGGGAGAATCAAAAGTTGAGAGACACGCTTCATCAGGTTAACGTCAATTACGATGCGCTTCAGATGCATTTCATGAATTTGATGCAGCAGAAGGGCGAGGAAGTTGAAGAACAAGAAGTGATTGGTGGAAAGTCAGAAGAGAAGAAGCAAGGAGAGAGTGGCGGCGTATTGGTGCCAAGACAGTTCATGGATCTTGGATTGGCTACTAATGCTGACACTGACGAACCCTCTTCTTCATCAGGGGGAAGAAGTCAAGATCGATCAGGATCACCCAACGCAGAAGTGGCCTCGAAGGAATTAGGAACCAGTATGAATGAGAATGTTAACGATGAAGGGTGTGACAAGGAGAAGAAGGAATATGGTAGAGGGGTTGAAAGTGAGGATAGTCCCTCAGGTCATGCTTTTGCTGGGGATAAAGTTCCAAGGTTCAGTCCTCAAAAGAGTAACGTTGAACATGCTGAGGCAACCATGAGGAAGGCAAGAGTTTCTGTTAGAGCTCGATCAGAAGCACCCATGATCACTGATGGATGTCAATGGAGAAAGTATGGGCAGAAGATGGCCAAAGGAAACCCATGTCCTAGAGCTTATTATAGGTGTACCATGGCTGCTGGTTGCCCAGTTAGAAAACAGGTACAAAGGTGTGCTGAAGATCGAACAGTCCTGAACACAACCTACGAAGGCAATCACAACCACCCTTTGCCACCAGCAGCTATGGCAATGGCACAAACCACTTCCTCAGCTGCAAGAATGCTTCTTTCTGGGTCAATGTCTAGTGCTGACAGCATAATGAATGCAAACTTACTCACAAGAGCACTCCTCCCTTGCTCTTCAAGCATTGCTACTATCTCAGCATCTGCTCCATTCCCAACTGTTACATTGGACCTAACACAATCTCCAAATCCTCTACAGTTCCCAAGGCACCCAAACCAGTTACAAATTCCCCTCCAAGGTATCCCTCAGAATTTTTCAAACTCCCCAGCCTCTTTAATGCCTCAGATATTTGGACAAGCACTCTACAACCAATCAAAGTTTTCTGGTCTTCAAATGTCACATGATGCAGACCCTTCACAATTTGGAAACCACCCTCAGCAGGTACCACCACACCTTACTGACACAGTTAGTGCTGCCATTGCTGCTGATCCAAACTTCACTGCAGCTTTGGCAGCAGCTATCACATCCATTATTGGTGGTGCTCAGCAGCACAACAACAGTAATAATACTAACAATAATGGCAACATGACACTCAGCAACAGCACTGGCAATGGCAACATCACAAGTAGCAACAACACCAACGGGAAGCAATAA 1770 0.4605 MVRGCGLSMDSDPIGSFFLHKPIVLNSFPEDTNHPKWKLTPHNNMDTIPFQVNLSCSPNNHHSPPPPLHNTTEMDFFSDNTNHNVSASASASASNHHHSTTPPTLEFKLNTGLNLLTTNTSSDQSMVDDEISPNSEDRRAENKLAVLQAELERMKRENQKLRDTLHQVNVNYDALQMHFMNLMQQKGEEVEEQEVIGGKSEEKKQGESGGVLVPRQFMDLGLATNADTDEPSSSSGGRSQDRSGSPNAEVASKELGTSMNENVNDEGCDKEKKEYGRGVESEDSPSGHAFAGDKVPRFSPQKSNVEHAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTVLNTTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSADSIMNANLLTRALLPCSSSIATISASAPFPTVTLDLTQSPNPLQFPRHPNQLQIPLQGIPQNFSNSPASLMPQIFGQALYNQSKFSGLQMSHDADPSQFGNHPQQVPPHLTDTVSAAIAADPNFTAALAAAITSIIGGAQQHNNSNNTNNNGNMTLSNSTGNGNITSSNNTNGKQ* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0867 589 ProSiteProfiles WRKY domain profile. 323 389 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra2g0867 589 MobiDBLite consensus disorder prediction 503 522 - -
Vra2g0867 589 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 47 576 IPR044810 GO:0003700
Vra2g0867 589 MobiDBLite consensus disorder prediction 557 589 - -
Vra2g0867 589 Gene3D WRKY domain 313 390 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra2g0867 589 MobiDBLite consensus disorder prediction 78 105 - -
Vra2g0867 589 PANTHER OS05G0567200 PROTEIN 47 576 - -
Vra2g0867 589 Coils Coil 137 171 - -
Vra2g0867 589 MobiDBLite consensus disorder prediction 190 211 - -
Vra2g0867 589 MobiDBLite consensus disorder prediction 264 281 - -
Vra2g0867 589 Pfam WRKY DNA -binding domain 330 387 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra2g0867 589 MobiDBLite consensus disorder prediction 190 208 - -
Vra2g0867 589 SMART WRKY_cls 328 388 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra2g0867 589 MobiDBLite consensus disorder prediction 224 307 - -
Vra2g0867 589 MobiDBLite consensus disorder prediction 118 139 - -
Vra2g0867 589 SUPERFAMILY WRKY DNA-binding domain 321 389 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra2g0867 589 MobiDBLite consensus disorder prediction 226 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0867 Vra-Chr2 8386906 8389711 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0867 109 564 WRKY Transcription Factor Family AT1G62300 52.350 1.06e-131 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra2g0867 WRKY 5.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0867 - - gmx:100797998 718.768