Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0866 ATGGGGTGGTGGCAAAGAGGCCACACCATTGGCCGGGGCTCATCAGCCACCGTCTCCACCGCCACCTGCTGCGCCGGTGGCGCTGTCTTTGCCGTGAAGTCCGCGGAGCTGTCTCGATCGGAGTCTTTGAAAAGGGAGCAGAAAATTTTGTCCTCTGTAAGTAGTCCTTATGTGGTTGCGTACAAAGGGTGTGACGTTACGATGGAAAACAACAAGCTCTTGTTCAACCTCTTCATGGAGCACATGCCCTTTGGCACGGTTGCTCAGGCGACTTGCCGGCACGGTGGCCGGCTCGAGGAAGTGGCTATGGCACGCTACACAAGGCAAATTGTGCAGGGGCTAGAGTACTTGCATTCAAAAGAATTGGTGCATTGCGACATCAAGGGTGCTAATATCTTAATCGGTGAAGATGGGGTGAAGATTGGAGACTTGGGGTGTGCTAAGAGTGTGGTGGATTCCACGGTGGTGATCGGCGGCACGCCGATGTTCATGGCCCCGGAGGTGGCGCGTGGGGAGGAGCAAGGGTGTGCCAGTGACATTTGGTCACTTGGGTGCACTGTGGTTGAAATGGCCACGGGTGATGCACCGTGGCCTAATGTGGAAGACCCTTTTTCGGTGCTTTATCATATTGCATATTCTGGTGAAGTGCCTGAGATTCCTTGCTTTCTATCTGAGGAAGCAAAGGATTTTTTGGGGAAGTGCTTGAGGAGGAATCCACAAGAGAGGTGGAATGCTAGTGAACTTTTGAAGCATCCATTTATTGGAAAATCATGTTCCAACAATAAGGAAGTTTTGGAATCTAATTCAAGTTCCCCAACTAGTGTTCTTGAGCCATGCTTTTGGAGCTCTGTGGAAGAGTCAGAAAGTGTTGGCGATTTGATTAACAACCCAAGAAAGTTTGAACTTTTGGCTGCTGGGAGGGTCAGAATGTTGGCTCTGTCTTCTGGGCTACCCTGTTGGGCACAACATGATGATGAAAATTGGATCACGGCCAGAGGCAATGGAGGGAAAGGTTTTGGCAATGGTGGGTCAGGGACAGCTTCTGCTAGTCATGAGTTGTCTCACTAG 1068 0.5075 MGWWQRGHTIGRGSSATVSTATCCAGGAVFAVKSAELSRSESLKREQKILSSVSSPYVVAYKGCDVTMENNKLLFNLFMEHMPFGTVAQATCRHGGRLEEVAMARYTRQIVQGLEYLHSKELVHCDIKGANILIGEDGVKIGDLGCAKSVVDSTVVIGGTPMFMAPEVARGEEQGCASDIWSLGCTVVEMATGDAPWPNVEDPFSVLYHIAYSGEVPEIPCFLSEEAKDFLGKCLRRNPQERWNASELLKHPFIGKSCSNNKEVLESNSSSPTSVLEPCFWSSVEESESVGDLINNPRKFELLAAGRVRMLALSSGLPCWAQHDDENWITARGNGGKGFGNGGSGTASASHELSH* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0866 355 PANTHER MAP KINASE KINASE KINASE 4 336 - -
Vra2g0866 355 CDD STKc_MAPKKK 4 254 - -
Vra2g0866 355 MobiDBLite consensus disorder prediction 332 355 - -
Vra2g0866 355 SUPERFAMILY Protein kinase-like (PK-like) 3 296 IPR011009 -
Vra2g0866 355 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vra2g0866 355 ProSiteProfiles Protein kinase domain profile. 4 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0866 355 Gene3D Transferase(Phosphotransferase) domain 1 1 304 - -
Vra2g0866 355 SMART serkin_6 4 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0866 355 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 336 - -
Vra2g0866 355 Pfam Protein kinase domain 5 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g0866 355 MobiDBLite consensus disorder prediction 341 355 - -
Vra2g0866 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0866 Vra-Chr2 8368155 8369473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0866 4 334 MAP Kinase Kinase Kinase AT1G05100 49.575 6.10e-107 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vra2g0866 Pkinase 1.9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0866 K20716 - gmx:100819665 570.852