Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0856 ATGGCTGAGGCGGAGGAGCTGCCCCGGTCTATCGTGCGCCGTGTTGTGAAGGATAAACTGTCCCGATGCTCTGAAGAAGGAGAAATTTCTGTCAGCAAAGATGGTCTTCTCGCATTCTCAGAAAGCGGTAGGATCTTCATCCACTACCTTTCCGCCACGGCTAATGACATATGTAAGGAGTCAAAGAGACAGATTGTCAGTGCTGAAGATGTTTTCAAAGCTCTTGAAGAAACTGAGTTCTCTGAGTTTGTTCGCCCTCTAAAAGCTTCCCTTGAAGAGTTTAGAAAGAAGAATGTTGAAAAGAAAGCGGCAGTGTCAAAGGGAAAGGGAGATGAGCAGAGAAAGAAAAGAAAATTGGAAGTTGAGTCATCTGACAAAGGTGAGGCTTCCATTAACGATGAGTCACCTGATAAAGCGGAGGATTCTGATAAAAGTGAGGGCGAGGAGGATGATGAATAA 459 0.451 MAEAEELPRSIVRRVVKDKLSRCSEEGEISVSKDGLLAFSESGRIFIHYLSATANDICKESKRQIVSAEDVFKALEETEFSEFVRPLKASLEEFRKKNVEKKAAVSKGKGDEQRKKRKLEVESSDKGEASINDESPDKAEDSDKSEGEEDDE* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0856 152 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 6 75 IPR003958 -
Vra2g0856 152 MobiDBLite consensus disorder prediction 100 142 - -
Vra2g0856 152 Gene3D Histone, subunit A 1 152 IPR009072 GO:0046982
Vra2g0856 152 Coils Coil 58 78 - -
Vra2g0856 152 SUPERFAMILY Histone-fold 7 118 IPR009072 GO:0046982
Vra2g0856 152 MobiDBLite consensus disorder prediction 100 152 - -
Vra2g0856 152 PANTHER DNA POLYMERASE EPSILON SUBUNIT 3 2 150 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0856 7 113 CCAAT-HAP3 Transcription Factor Family AT4G14540 28.037 6.09e-09 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vra2g0856 CBFD_NFYB_HMF 1.4e-06 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0856 K02326 - gmx:100306382 223.016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0856 2 8034518 8036377 Vra2g0856 2 8034518 8036377 ECH